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MAG: histidine--tRNA ligase [Verrucomicrobia bacterium 13_1_40CM_4_54_4]

GenBank: OLC29491.1

Identical Proteins FASTA Graphics 

LOCUS       OLC29491                 416 aa            linear   ENV 23-DEC-2016
DEFINITION  MAG: histidine--tRNA ligase [Verrucomicrobia bacterium
            13_1_40CM_4_54_4].
ACCESSION   OLC29491
VERSION     OLC29491.1
DBLINK      BioProject: PRJNA297196
            BioSample: SAMN04327898
DBSOURCE    accession MNEZ01000002.1
KEYWORDS    ENV; Metagenome Assembled Genome; MAG.
SOURCE      Verrucomicrobia bacterium 13_1_40CM_4_54_4 (soil metagenome)
  ORGANISM  Verrucomicrobia bacterium 13_1_40CM_4_54_4
            Bacteria; Pseudomonadati; Verrucomicrobiota.
REFERENCE   1  (residues 1 to 416)
  AUTHORS   Butterfield,C.N., Li,Z., Andeer,P.F., Spaulding,S., Thomas,B.C.,
            Singh,A., Hettich,R.L., Suttle,K.B., Probst,A.J., Tringe,S.G.,
            Northen,T., Pan,C. and Banfield,J.F.
  TITLE     Proteogenomic analyses indicate bacterial methylotrophy and
            archaeal heterotrophy are prevalent below the grass root zone
  JOURNAL   PeerJ 4, E2687 (2016)
   PUBMED   27843720
  REMARK    Publication Status: Online-Only
REFERENCE   2  (residues 1 to 416)
  AUTHORS   Butterfield,C.N., Li,Z., Andeer,P., Spaulding,S., Thomas,B.C.,
            Singh,A., Suttle,B., Probst,A.J., Hettich,R., Tringe,S.G.,
            Northen,T., Pan,C. and Banfield,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2016) Earth and Planetary Sciences, UC Berkeley,
            305 McCone Hall, Berkeley, CA 94720, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA_UD v. 06.01.2014s
            Genome Coverage       :: 10x
            Sequencing Technology :: Illumina HiSeq2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/25/2016 19:52:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 915
            CDS (total)                       :: 905
            Genes (coding)                    :: 798
            CDS (coding)                      :: 798
            Genes (RNA)                       :: 10
            tRNAs                             :: 9
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 107
            Pseudo Genes (ambiguous residues) :: 17 of 107
            Pseudo Genes (frameshifted)       :: 23 of 107
            Pseudo Genes (incomplete)         :: 67 of 107
            Pseudo Genes (internal stop)      :: 5 of 107
            Pseudo Genes (multiple problems)  :: 5 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Verrucomicrobia bacterium 13_1_40CM_4_54_4"
                     /isolation_source="Soil sample from Angelo meadow plot 1,
                     40cm depth, 2 days after first rain event (91mm)"
                     /db_xref="taxon:1805415"
                     /environmental_sample
                     /geo_loc_name="USA: Angelo, CA"
                     /lat_lon="39.74 N 123.63 W"
                     /collection_date="02-Oct-2013"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     Protein         1..416
                     /product="histidine--tRNA ligase"
     Region          1..410
                     /region_name="HisS"
                     /note="Histidyl-tRNA synthetase [Translation, ribosomal
                     structure and biogenesis]; COG0124"
                     /db_xref="CDD:439894"
     CDS             1..416
                     /locus_tag="AUH91_00160"
                     /coded_by="complement(MNEZ01000002.1:16705..17955)"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_012462422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mqtlpgfrdf lpedwakrny ifarwrevtr rygfvewegp lleptelykk ksgaeivdql
       61 fnftdkgere valrpeltpt larvvaaher efkkplkwfs igqffryekq qrgrlrehfq
      121 lncdiigead laadielval cidllrafgf terdfvvris drefwtdflr erdvpadrwd
      181 ellqaidkfg reprektagk lgnlaepvfa tlksagkdek lgrlvdalrg rgladfvaid
      241 igivrglayy tgivfevfdr agsfravagg grydnliaql sdgavslpal gfamgdvilg
      301 elinevphar eamekaiasd rkigiyvvia keerrgdalt qaqqlrdlgy gvdypftptk
      361 vpkqfqtaed lgatiailyg dewpqvklkn mataeqelvp hdrllahlqa qpslss
//
Feature
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