LOCUS OLC29491 416 aa linear ENV 23-DEC-2016
DEFINITION MAG: histidine--tRNA ligase [Verrucomicrobia bacterium
13_1_40CM_4_54_4].
ACCESSION OLC29491
VERSION OLC29491.1
DBLINK BioProject: PRJNA297196
BioSample: SAMN04327898
DBSOURCE accession MNEZ01000002.1
KEYWORDS ENV; Metagenome Assembled Genome; MAG.
SOURCE Verrucomicrobia bacterium 13_1_40CM_4_54_4 (soil metagenome)
ORGANISM Verrucomicrobia bacterium 13_1_40CM_4_54_4
Bacteria; Pseudomonadati; Verrucomicrobiota.
REFERENCE 1 (residues 1 to 416)
AUTHORS Butterfield,C.N., Li,Z., Andeer,P.F., Spaulding,S., Thomas,B.C.,
Singh,A., Hettich,R.L., Suttle,K.B., Probst,A.J., Tringe,S.G.,
Northen,T., Pan,C. and Banfield,J.F.
TITLE Proteogenomic analyses indicate bacterial methylotrophy and
archaeal heterotrophy are prevalent below the grass root zone
JOURNAL PeerJ 4, E2687 (2016)
PUBMED 27843720
REMARK Publication Status: Online-Only
REFERENCE 2 (residues 1 to 416)
AUTHORS Butterfield,C.N., Li,Z., Andeer,P., Spaulding,S., Thomas,B.C.,
Singh,A., Suttle,B., Probst,A.J., Hettich,R., Tringe,S.G.,
Northen,T., Pan,C. and Banfield,J.F.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2016) Earth and Planetary Sciences, UC Berkeley,
305 McCone Hall, Berkeley, CA 94720, USA
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: IDBA_UD v. 06.01.2014s
Genome Coverage :: 10x
Sequencing Technology :: Illumina HiSeq2000
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 10/25/2016 19:52:32
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.3
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 915
CDS (total) :: 905
Genes (coding) :: 798
CDS (coding) :: 798
Genes (RNA) :: 10
tRNAs :: 9
ncRNAs :: 1
Pseudo Genes (total) :: 107
Pseudo Genes (ambiguous residues) :: 17 of 107
Pseudo Genes (frameshifted) :: 23 of 107
Pseudo Genes (incomplete) :: 67 of 107
Pseudo Genes (internal stop) :: 5 of 107
Pseudo Genes (multiple problems) :: 5 of 107
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..416
/organism="Verrucomicrobia bacterium 13_1_40CM_4_54_4"
/isolation_source="Soil sample from Angelo meadow plot 1,
40cm depth, 2 days after first rain event (91mm)"
/db_xref="taxon:1805415"
/environmental_sample
/geo_loc_name="USA: Angelo, CA"
/lat_lon="39.74 N 123.63 W"
/collection_date="02-Oct-2013"
/metagenome_source="soil metagenome"
/note="metagenomic"
Protein 1..416
/product="histidine--tRNA ligase"
Region 1..410
/region_name="HisS"
/note="Histidyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis]; COG0124"
/db_xref="CDD:439894"
CDS 1..416
/locus_tag="AUH91_00160"
/coded_by="complement(MNEZ01000002.1:16705..17955)"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_012462422.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 mqtlpgfrdf lpedwakrny ifarwrevtr rygfvewegp lleptelykk ksgaeivdql
61 fnftdkgere valrpeltpt larvvaaher efkkplkwfs igqffryekq qrgrlrehfq
121 lncdiigead laadielval cidllrafgf terdfvvris drefwtdflr erdvpadrwd
181 ellqaidkfg reprektagk lgnlaepvfa tlksagkdek lgrlvdalrg rgladfvaid
241 igivrglayy tgivfevfdr agsfravagg grydnliaql sdgavslpal gfamgdvilg
301 elinevphar eamekaiasd rkigiyvvia keerrgdalt qaqqlrdlgy gvdypftptk
361 vpkqfqtaed lgatiailyg dewpqvklkn mataeqelvp hdrllahlqa qpslss
//