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MAG: protein TolR [Alphaproteobacteria bacterium 13_1_20CM_4_65_11]

GenBank: OLD92683.1

Identical Proteins FASTA Graphics 

LOCUS       OLD92683                 163 aa            linear   ENV 23-DEC-2016
DEFINITION  MAG: protein TolR [Alphaproteobacteria bacterium
            13_1_20CM_4_65_11].
ACCESSION   OLD92683
VERSION     OLD92683.1
DBLINK      BioProject: PRJNA297196
            BioSample: SAMN04327799
DBSOURCE    accession MNJB01000013.1
KEYWORDS    ENV; Metagenome Assembled Genome; MAG.
SOURCE      Alphaproteobacteria bacterium 13_1_20CM_4_65_11 (soil metagenome)
  ORGANISM  Alphaproteobacteria bacterium 13_1_20CM_4_65_11
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria.
REFERENCE   1  (residues 1 to 163)
  AUTHORS   Butterfield,C.N., Li,Z., Andeer,P.F., Spaulding,S., Thomas,B.C.,
            Singh,A., Hettich,R.L., Suttle,K.B., Probst,A.J., Tringe,S.G.,
            Northen,T., Pan,C. and Banfield,J.F.
  TITLE     Proteogenomic analyses indicate bacterial methylotrophy and
            archaeal heterotrophy are prevalent below the grass root zone
  JOURNAL   PeerJ 4, E2687 (2016)
   PUBMED   27843720
  REMARK    Publication Status: Online-Only
REFERENCE   2  (residues 1 to 163)
  AUTHORS   Butterfield,C.N., Li,Z., Andeer,P., Spaulding,S., Thomas,B.C.,
            Singh,A., Suttle,B., Probst,A.J., Hettich,R., Tringe,S.G.,
            Northen,T., Pan,C. and Banfield,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2016) Earth and Planetary Sciences, UC Berkeley,
            305 McCone Hall, Berkeley, CA 94720, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA_UD v. 06.01.2014s
            Genome Coverage       :: 10x
            Sequencing Technology :: Illumina HiSeq2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/25/2016 21:48:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 582
            CDS (total)                       :: 578
            Genes (coding)                    :: 498
            CDS (coding)                      :: 498
            Genes (RNA)                       :: 4
            tRNAs                             :: 3
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 80
            Pseudo Genes (ambiguous residues) :: 3 of 80
            Pseudo Genes (frameshifted)       :: 19 of 80
            Pseudo Genes (incomplete)         :: 58 of 80
            Pseudo Genes (internal stop)      :: 2 of 80
            Pseudo Genes (multiple problems)  :: 2 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..163
                     /organism="Alphaproteobacteria bacterium
                     13_1_20CM_4_65_11"
                     /isolation_source="Soil sample from Angelo meadow plot 1,
                     20cm depth, 2 days after second rain event (91mm)"
                     /db_xref="taxon:1803503"
                     /environmental_sample
                     /geo_loc_name="USA: Angelo, CA"
                     /lat_lon="39.74 N 123.63 W"
                     /collection_date="02-Oct-2013"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     Protein         1..163
                     /product="protein TolR"
     Region          23..144
                     /region_name="tolR"
                     /note="TolR protein; TIGR02801"
                     /db_xref="CDD:274306"
     CDS             1..163
                     /locus_tag="AUG92_00825"
                     /coded_by="MNJB01000013.1:3680..4171"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_012973606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 maspvysgav rtsgrsgrnr hrpmseinvt plvdvmlvll vifmvtapll tvgvpvdlpq
       61 tqapainepk eplvitlnre gviyvqetti etdalvpklq aitganpdav iyvrgdkdin
      121 ygrvlevmsl vssagfrkvs lvaeapkgrp aaastrpgss trr
//
Feature
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