LOCUS OLD92683 163 aa linear ENV 23-DEC-2016
DEFINITION MAG: protein TolR [Alphaproteobacteria bacterium
13_1_20CM_4_65_11].
ACCESSION OLD92683
VERSION OLD92683.1
DBLINK BioProject: PRJNA297196
BioSample: SAMN04327799
DBSOURCE accession MNJB01000013.1
KEYWORDS ENV; Metagenome Assembled Genome; MAG.
SOURCE Alphaproteobacteria bacterium 13_1_20CM_4_65_11 (soil metagenome)
ORGANISM Alphaproteobacteria bacterium 13_1_20CM_4_65_11
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria.
REFERENCE 1 (residues 1 to 163)
AUTHORS Butterfield,C.N., Li,Z., Andeer,P.F., Spaulding,S., Thomas,B.C.,
Singh,A., Hettich,R.L., Suttle,K.B., Probst,A.J., Tringe,S.G.,
Northen,T., Pan,C. and Banfield,J.F.
TITLE Proteogenomic analyses indicate bacterial methylotrophy and
archaeal heterotrophy are prevalent below the grass root zone
JOURNAL PeerJ 4, E2687 (2016)
PUBMED 27843720
REMARK Publication Status: Online-Only
REFERENCE 2 (residues 1 to 163)
AUTHORS Butterfield,C.N., Li,Z., Andeer,P., Spaulding,S., Thomas,B.C.,
Singh,A., Suttle,B., Probst,A.J., Hettich,R., Tringe,S.G.,
Northen,T., Pan,C. and Banfield,J.F.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2016) Earth and Planetary Sciences, UC Berkeley,
305 McCone Hall, Berkeley, CA 94720, USA
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: IDBA_UD v. 06.01.2014s
Genome Coverage :: 10x
Sequencing Technology :: Illumina HiSeq2000
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 10/25/2016 21:48:25
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.3
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 582
CDS (total) :: 578
Genes (coding) :: 498
CDS (coding) :: 498
Genes (RNA) :: 4
tRNAs :: 3
ncRNAs :: 1
Pseudo Genes (total) :: 80
Pseudo Genes (ambiguous residues) :: 3 of 80
Pseudo Genes (frameshifted) :: 19 of 80
Pseudo Genes (incomplete) :: 58 of 80
Pseudo Genes (internal stop) :: 2 of 80
Pseudo Genes (multiple problems) :: 2 of 80
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..163
/organism="Alphaproteobacteria bacterium
13_1_20CM_4_65_11"
/isolation_source="Soil sample from Angelo meadow plot 1,
20cm depth, 2 days after second rain event (91mm)"
/db_xref="taxon:1803503"
/environmental_sample
/geo_loc_name="USA: Angelo, CA"
/lat_lon="39.74 N 123.63 W"
/collection_date="02-Oct-2013"
/metagenome_source="soil metagenome"
/note="metagenomic"
Protein 1..163
/product="protein TolR"
Region 23..144
/region_name="tolR"
/note="TolR protein; TIGR02801"
/db_xref="CDD:274306"
CDS 1..163
/locus_tag="AUG92_00825"
/coded_by="MNJB01000013.1:3680..4171"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_012973606.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 maspvysgav rtsgrsgrnr hrpmseinvt plvdvmlvll vifmvtapll tvgvpvdlpq
61 tqapainepk eplvitlnre gviyvqetti etdalvpklq aitganpdav iyvrgdkdin
121 ygrvlevmsl vssagfrkvs lvaeapkgrp aaastrpgss trr
//