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translation initiation factor IF-2 [Haemophilus parahaemolyticus]

GenBank: OOR97670.1

Identical Proteins FASTA Graphics 

LOCUS       OOR97670                 850 aa            linear   BCT 03-MAR-2017
DEFINITION  translation initiation factor IF-2 [Haemophilus parahaemolyticus].
ACCESSION   OOR97670
VERSION     OOR97670.1
DBLINK      BioProject: PRJNA302716
            BioSample: SAMN06308710
DBSOURCE    accession MUXY01000001.1
KEYWORDS    .
SOURCE      Haemophilus parahaemolyticus
  ORGANISM  Haemophilus parahaemolyticus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Haemophilus.
REFERENCE   1  (residues 1 to 850)
  AUTHORS   Engstrom-Jakobsson,H., Salva-Serra,F., Thorell,K.,
            Gonzales-Siles,L., Karlsson,R., Boulund,F., Engstrand,L.,
            Kristiansson,E. and Moore,E.
  TITLE     Draft genome sequence of Haemophilus parahaemolyticus CCUG 3716
            type strain
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 850)
  AUTHORS   Engstrom-Jakobsson,H., Salva-Serra,F., Thorell,K.,
            Gonzales-Siles,L., Karlsson,R., Boulund,F., Engstrand,L.,
            Kristiansson,E. and Moore,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2017) Infectious Diseases, University of
            Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra
            Gotaland 40234, Sweden
COMMENT     Bacteria and source DNA available from CCUG.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 11-JAN-2017
            Assembly Method        :: CLC Genomic Workbench v. 9.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 67.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 02/07/2017 17:04:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,019
            CDS (total)                       :: 1,959
            Genes (coding)                    :: 1,890
            CDS (coding)                      :: 1,890
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 31 of 69
            Pseudo Genes (incomplete)         :: 33 of 69
            Pseudo Genes (internal stop)      :: 19 of 69
            Pseudo Genes (multiple problems)  :: 13 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Haemophilus parahaemolyticus"
                     /strain="CCUG 3716"
                     /host="Homo sapiens"
                     /culture_collection="CCUG:3716"
                     /type_material="type strain of Haemophilus
                     parahaemolyticus"
                     /db_xref="taxon:735"
                     /geo_loc_name="USA: Maryland"
                     /lat_lon="39.05 N 76 W"
                     /collection_date="1951"
                     /collected_by="M.Pittman"
     Protein         1..850
                     /product="translation initiation factor IF-2"
     Region          <3..>351
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          274..324
                     /region_name="IF2_N"
                     /note="Translation initiation factor IF-2, N-terminal
                     region; pfam04760"
                     /db_xref="CDD:428110"
     Region          348..850
                     /region_name="InfB"
                     /note="Translation initiation factor IF-2, a GTPase
                     [Translation, ribosomal structure and biogenesis];
                     COG0532"
                     /db_xref="CDD:440298"
     CDS             1..850
                     /locus_tag="B0185_02385"
                     /coded_by="complement(MUXY01000001.1:491748..494300)"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mtektekktl slggarktsk anatttggkt kavevkekka pidakalkek aeqeaklale
       61 kaakekeaae kaareaeeka kaeadakaae eakkaeeara akkpaapvmp nkvakpaqpk
      121 vetpkqekav dpgkeakkke eaelrrkqee larqkaemda kraaenarrl aeiereeagd
      181 nnnedfeder ftssyardae rdndrrsegg nrrggkngvv kakkgreddk nersadrrnq
      241 rdqkgkgkgk kgaalqqaft kpaqvmkadv vigetitvae lankmavkat eiiktlmkmg
      301 emvtinqvid qetaqlvaee mghkvilrke neleesvmsd rdtdaelvtr apvvtimghv
      361 dhgktslldy irkakvaage aggitqhiga yhvetndgkm itfldtpgha aftsmrarga
      421 katdivvlvv aaddgvmpqt ieaiqhakaa gaplvvavnk idkpeanpdr veqellqyev
      481 isekfggdvq fvpvsakkgt gidelldaiv lqsevlelta vkdgmasgvv iesyldkgrg
      541 pvatilvqsg tlhkgdivlc gfeygrvram rdengkevde agpslpvevl glsgvpaagd
      601 eatvvrdekk arevalyrqg kfrevklarq qkaklenmfs nmtegdvsel nvivkadvqg
      661 sveaivqaln elsteevrvk vvgsgvggit etdatlaaas naiivgfnvr adatarrvie
      721 nenidlryys iiyellneik aamsgmlqpe fkqeiiglae vrdvfrhpkf gaiagcmvte
      781 gvvkrnnpir vlrdnvvife geleslrrfk ddvsevrngm ecgigvknyn dvkvgdqiev
      841 fevvevkrsi
//
Feature
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for translation initiation factor IF-2 (WP_005705514.1).

More about the gene infB

  • infB gene
    Also Known As: I6J29_RS02455, I6J29_02...

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