LOCUS OOR97670 850 aa linear BCT 03-MAR-2017
DEFINITION translation initiation factor IF-2 [Haemophilus parahaemolyticus].
ACCESSION OOR97670
VERSION OOR97670.1
DBLINK BioProject: PRJNA302716
BioSample: SAMN06308710
DBSOURCE accession MUXY01000001.1
KEYWORDS .
SOURCE Haemophilus parahaemolyticus
ORGANISM Haemophilus parahaemolyticus
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Pasteurellales; Pasteurellaceae; Haemophilus.
REFERENCE 1 (residues 1 to 850)
AUTHORS Engstrom-Jakobsson,H., Salva-Serra,F., Thorell,K.,
Gonzales-Siles,L., Karlsson,R., Boulund,F., Engstrand,L.,
Kristiansson,E. and Moore,E.
TITLE Draft genome sequence of Haemophilus parahaemolyticus CCUG 3716
type strain
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 850)
AUTHORS Engstrom-Jakobsson,H., Salva-Serra,F., Thorell,K.,
Gonzales-Siles,L., Karlsson,R., Boulund,F., Engstrand,L.,
Kristiansson,E. and Moore,E.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2017) Infectious Diseases, University of
Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra
Gotaland 40234, Sweden
COMMENT Bacteria and source DNA available from CCUG.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 11-JAN-2017
Assembly Method :: CLC Genomic Workbench v. 9.5.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 67.0x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 02/07/2017 17:04:37
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 2,019
CDS (total) :: 1,959
Genes (coding) :: 1,890
CDS (coding) :: 1,890
Genes (RNA) :: 60
rRNAs :: 2, 1, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 1 (5S, 16S)
partial rRNAs :: 2 (23S)
tRNAs :: 51
ncRNAs :: 4
Pseudo Genes (total) :: 69
Pseudo Genes (ambiguous residues) :: 0 of 69
Pseudo Genes (frameshifted) :: 31 of 69
Pseudo Genes (incomplete) :: 33 of 69
Pseudo Genes (internal stop) :: 19 of 69
Pseudo Genes (multiple problems) :: 13 of 69
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..850
/organism="Haemophilus parahaemolyticus"
/strain="CCUG 3716"
/host="Homo sapiens"
/culture_collection="CCUG:3716"
/type_material="type strain of Haemophilus
parahaemolyticus"
/db_xref="taxon:735"
/geo_loc_name="USA: Maryland"
/lat_lon="39.05 N 76 W"
/collection_date="1951"
/collected_by="M.Pittman"
Protein 1..850
/product="translation initiation factor IF-2"
Region <3..>351
/region_name="PTZ00121"
/note="MAEBL; Provisional"
/db_xref="CDD:173412"
Region 274..324
/region_name="IF2_N"
/note="Translation initiation factor IF-2, N-terminal
region; pfam04760"
/db_xref="CDD:428110"
Region 348..850
/region_name="InfB"
/note="Translation initiation factor IF-2, a GTPase
[Translation, ribosomal structure and biogenesis];
COG0532"
/db_xref="CDD:440298"
CDS 1..850
/locus_tag="B0185_02385"
/coded_by="complement(MUXY01000001.1:491748..494300)"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005600786.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 mtektekktl slggarktsk anatttggkt kavevkekka pidakalkek aeqeaklale
61 kaakekeaae kaareaeeka kaeadakaae eakkaeeara akkpaapvmp nkvakpaqpk
121 vetpkqekav dpgkeakkke eaelrrkqee larqkaemda kraaenarrl aeiereeagd
181 nnnedfeder ftssyardae rdndrrsegg nrrggkngvv kakkgreddk nersadrrnq
241 rdqkgkgkgk kgaalqqaft kpaqvmkadv vigetitvae lankmavkat eiiktlmkmg
301 emvtinqvid qetaqlvaee mghkvilrke neleesvmsd rdtdaelvtr apvvtimghv
361 dhgktslldy irkakvaage aggitqhiga yhvetndgkm itfldtpgha aftsmrarga
421 katdivvlvv aaddgvmpqt ieaiqhakaa gaplvvavnk idkpeanpdr veqellqyev
481 isekfggdvq fvpvsakkgt gidelldaiv lqsevlelta vkdgmasgvv iesyldkgrg
541 pvatilvqsg tlhkgdivlc gfeygrvram rdengkevde agpslpvevl glsgvpaagd
601 eatvvrdekk arevalyrqg kfrevklarq qkaklenmfs nmtegdvsel nvivkadvqg
661 sveaivqaln elsteevrvk vvgsgvggit etdatlaaas naiivgfnvr adatarrvie
721 nenidlryys iiyellneik aamsgmlqpe fkqeiiglae vrdvfrhpkf gaiagcmvte
781 gvvkrnnpir vlrdnvvife geleslrrfk ddvsevrngm ecgigvknyn dvkvgdqiev
841 fevvevkrsi
//