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MAG: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A [Ignavibacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_15]

GenBank: PIP79780.1

Identical Proteins FASTA Graphics 

LOCUS       PIP79780                 476 aa            linear   ENV 14-NOV-2017
DEFINITION  MAG: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A
            [Ignavibacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_15].
ACCESSION   PIP79780
VERSION     PIP79780.1
DBLINK      BioProject: PRJNA362739
            BioSample: SAMN06659635
DBSOURCE    accession PCTO01000001.1
KEYWORDS    ENV; Metagenome Assembled Genome; MAG.
SOURCE      Ignavibacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_15
            (groundwater metagenome)
  ORGANISM  Ignavibacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_15
            Bacteria; Pseudomonadati; Ignavibacteriota; Ignavibacteria.
REFERENCE   1  (residues 1 to 476)
  AUTHORS   Probst,A.J., Ladd,B., Jarett,J.K., Geller-McGrath,D.E.,
            Sieber,C.M., Emerson,J.B., Anantharaman,K., Thomas,B.C.,
            Malmstrom,R.R., Stieglmeier,M., Klingl,A., Woyke,T., Ryan,M.C. and
            Banfield,J.F.
  TITLE     Differential depth distribution of microbial function and putative
            symbionts through sediment-hosted aquifers in the deep terrestrial
            subsurface
  JOURNAL   Nat Microbiol 3 (3), 328-336 (2018)
   PUBMED   29379208
REFERENCE   2  (residues 1 to 476)
  AUTHORS   Probst,A.J., Ladd,B., Jarett,J.K., Geller-Mcgrath,D.E.,
            Sieber,C.M., Emerson,J.B., Anantharaman,K., Thomas,B.C.,
            Malmstrom,R., Stieglmeier,M., Klingl,A., Woyke,T., Ryan,C.M. and
            Banfield,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-SEP-2017) Department of Earth and Planetary Science,
            University of California, Berkeley, 307 McCone Hall, Berkeley, CA
            94709, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA-UD v. 02.2016
            Genome Coverage       :: 10x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/05/2017 17:36:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,207
            CDS (total)                       :: 3,161
            Genes (coding)                    :: 3,048
            CDS (coding)                      :: 3,048
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 113
            Pseudo Genes (ambiguous residues) :: 83 of 113
            Pseudo Genes (frameshifted)       :: 19 of 113
            Pseudo Genes (incomplete)         :: 22 of 113
            Pseudo Genes (internal stop)      :: 7 of 113
            Pseudo Genes (multiple problems)  :: 18 of 113
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Ignavibacteria bacterium
                     CG22_combo_CG10-13_8_21_14_all_37_15"
                     /isolate="CG22_combo_CG10-13_8_21_14_all_37_15"
                     /isolation_source="groundwater"
                     /db_xref="taxon:1974042"
                     /environmental_sample
                     /geo_loc_name="USA: Crystal Geyser near Green River, Utah"
                     /lat_lon="38.56 N 110.8 W"
                     /collection_date="21-Aug-2014"
                     /metagenome_source="groundwater metagenome"
                     /note="metagenomic"
     Protein         1..476
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     GatCAB subunit A"
     Region          12..466
                     /region_name="Amidase"
                     /note="cl18951"
                     /db_xref="CDD:450241"
     CDS             1..476
                     /locus_tag="COW85_00085"
                     /coded_by="complement(PCTO01000001.1:15608..17038)"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014560953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 msyknytekl rllkegklsl venvqnflsr ieerknlnaf tflfaeeaiq katevelkia
       61 vgsfgklagl vfavkdvlai kdkpltcssr ilenftslyt atavqkllde daiiigktnc
      121 defamgssne nsafgavknp ldetrvpggs sggsavavaa nlcdvalgtd tggsirqpaa
      181 fcgiyglkpt yglvsrfglt afassfdcig pfansvedia ltlevlagqd ksdstsinae
      241 kkvypnllgn nkqklkigip keyfveglsl eikeqielvi hklkelnfsi eevslphtef
      301 aiatyyiltt aeassnlarf dgtrygyrsk qssslkemyn asrsegfgse vkrrimlgty
      361 vlssgyyday ykkaqkvrrk ikedfvkvfs kidvlltptt pttafklgek tsdplemyls
      421 difttsanla gipginipig kdknnlpmgl qllanqfeee kllqlgstit geilii
//
Feature
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