LOCUS PIP79780 476 aa linear ENV 14-NOV-2017
DEFINITION MAG: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A
[Ignavibacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_15].
ACCESSION PIP79780
VERSION PIP79780.1
DBLINK BioProject: PRJNA362739
BioSample: SAMN06659635
DBSOURCE accession PCTO01000001.1
KEYWORDS ENV; Metagenome Assembled Genome; MAG.
SOURCE Ignavibacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_15
(groundwater metagenome)
ORGANISM Ignavibacteria bacterium CG22_combo_CG10-13_8_21_14_all_37_15
Bacteria; Pseudomonadati; Ignavibacteriota; Ignavibacteria.
REFERENCE 1 (residues 1 to 476)
AUTHORS Probst,A.J., Ladd,B., Jarett,J.K., Geller-McGrath,D.E.,
Sieber,C.M., Emerson,J.B., Anantharaman,K., Thomas,B.C.,
Malmstrom,R.R., Stieglmeier,M., Klingl,A., Woyke,T., Ryan,M.C. and
Banfield,J.F.
TITLE Differential depth distribution of microbial function and putative
symbionts through sediment-hosted aquifers in the deep terrestrial
subsurface
JOURNAL Nat Microbiol 3 (3), 328-336 (2018)
PUBMED 29379208
REFERENCE 2 (residues 1 to 476)
AUTHORS Probst,A.J., Ladd,B., Jarett,J.K., Geller-Mcgrath,D.E.,
Sieber,C.M., Emerson,J.B., Anantharaman,K., Thomas,B.C.,
Malmstrom,R., Stieglmeier,M., Klingl,A., Woyke,T., Ryan,C.M. and
Banfield,J.F.
TITLE Direct Submission
JOURNAL Submitted (15-SEP-2017) Department of Earth and Planetary Science,
University of California, Berkeley, 307 McCone Hall, Berkeley, CA
94709, USA
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: IDBA-UD v. 02.2016
Genome Coverage :: 10x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 10/05/2017 17:36:25
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,207
CDS (total) :: 3,161
Genes (coding) :: 3,048
CDS (coding) :: 3,048
Genes (RNA) :: 46
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1 (5S)
partial rRNAs :: 1, 1 (16S, 23S)
tRNAs :: 40
ncRNAs :: 3
Pseudo Genes (total) :: 113
Pseudo Genes (ambiguous residues) :: 83 of 113
Pseudo Genes (frameshifted) :: 19 of 113
Pseudo Genes (incomplete) :: 22 of 113
Pseudo Genes (internal stop) :: 7 of 113
Pseudo Genes (multiple problems) :: 18 of 113
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..476
/organism="Ignavibacteria bacterium
CG22_combo_CG10-13_8_21_14_all_37_15"
/isolate="CG22_combo_CG10-13_8_21_14_all_37_15"
/isolation_source="groundwater"
/db_xref="taxon:1974042"
/environmental_sample
/geo_loc_name="USA: Crystal Geyser near Green River, Utah"
/lat_lon="38.56 N 110.8 W"
/collection_date="21-Aug-2014"
/metagenome_source="groundwater metagenome"
/note="metagenomic"
Protein 1..476
/product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
GatCAB subunit A"
Region 12..466
/region_name="Amidase"
/note="cl18951"
/db_xref="CDD:450241"
CDS 1..476
/locus_tag="COW85_00085"
/coded_by="complement(PCTO01000001.1:15608..17038)"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014560953.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 msyknytekl rllkegklsl venvqnflsr ieerknlnaf tflfaeeaiq katevelkia
61 vgsfgklagl vfavkdvlai kdkpltcssr ilenftslyt atavqkllde daiiigktnc
121 defamgssne nsafgavknp ldetrvpggs sggsavavaa nlcdvalgtd tggsirqpaa
181 fcgiyglkpt yglvsrfglt afassfdcig pfansvedia ltlevlagqd ksdstsinae
241 kkvypnllgn nkqklkigip keyfveglsl eikeqielvi hklkelnfsi eevslphtef
301 aiatyyiltt aeassnlarf dgtrygyrsk qssslkemyn asrsegfgse vkrrimlgty
361 vlssgyyday ykkaqkvrrk ikedfvkvfs kidvlltptt pttafklgek tsdplemyls
421 difttsanla gipginipig kdknnlpmgl qllanqfeee kllqlgstit geilii
//