LOCUS PMM22202 305 aa linear BCT 11-JAN-2018
DEFINITION 1,4-dihydroxy-2-naphthoate polyprenyltransferase [Vibrio lentus].
ACCESSION PMM22202
VERSION PMM22202.1
DBLINK BioProject: PRJNA328102
BioSample: SAMN05418061
DBSOURCE accession MCZC01000046.1
KEYWORDS .
SOURCE Vibrio lentus
ORGANISM Vibrio lentus
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Vibrionales; Vibrionaceae; Vibrio.
REFERENCE 1 (residues 1 to 305)
AUTHORS Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M.,
Chang,W.K., VanInsberghe,D., Elsherbini,J., Sharma,R.S.,
Cutler,M.B., Kelly,L. and Polz,M.F.
TITLE A major lineage of non-tailed dsDNA viruses as unrecognized killers
of marine bacteria
JOURNAL Nature 554 (7690), 118-122 (2018)
PUBMED 29364876
REFERENCE 2 (residues 1 to 305)
AUTHORS Kauffman,K., Arevalo,P. and Polz,M.F.
TITLE Direct Submission
JOURNAL Submitted (29-JUL-2016) Civil and Environmental Engineering,
Massachusetts Institute of Technology, 77 Massachusetts Avenue,
Cambridge, MA 02139, USA
COMMENT Source DNA available from Martin Polz, 77 Massachusetts Ave.,
Cambridge, MA.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: CLC GWB v. 8.0
Genome Coverage :: 103x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 08/10/2016 14:42:40
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.3
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,056
CDS (total) :: 4,965
Genes (coding) :: 4,888
CDS (coding) :: 4,888
Genes (RNA) :: 91
rRNAs :: 3, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 3, 1, 1 (5S, 16S, 23S)
tRNAs :: 82
ncRNAs :: 4
Pseudo Genes (total) :: 77
Pseudo Genes (ambiguous residues) :: 2 of 77
Pseudo Genes (frameshifted) :: 32 of 77
Pseudo Genes (incomplete) :: 39 of 77
Pseudo Genes (internal stop) :: 20 of 77
Pseudo Genes (multiple problems) :: 16 of 77
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..305
/organism="Vibrio lentus"
/strain="10N.261.48.C12"
/isolation_source="Filtered Seawater, 1-5 micron fraction"
/db_xref="taxon:136468"
/geo_loc_name="USA: Massachusetts, Nahant, Canoe Cove"
/collection_date="18-Sep-2010"
Protein 1..305
/product="1,4-dihydroxy-2-naphthoate
polyprenyltransferase"
Region 7..301
/region_name="PRK06080"
/note="1,4-dihydroxy-2-naphthoate octaprenyltransferase;
Validated"
/db_xref="CDD:235695"
CDS 1..305
/locus_tag="BCT57_10665"
/coded_by="MCZC01000046.1:71700..72617"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_017061151.1"
/note="catalyzes the formation of dimethylmenaquinone from
1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate;
Derived by automated computational analysis using gene
prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 mkqslliwld aarpktlpla lvsiltgssl afandqfsls iallafltat llqilsnlan
61 dygdavkgtd ndkrlgpmra mqsgavtaqt mkqaiilniv ftviaglili fhalsslesi
121 lsfialgvla ivaaiaytvg nkpygyiglg dlsvfiffgl lgvsgtyflh tghvepslfl
181 palgcglmav avlninnmrd iendsecgkr tmavrlgqrk akqyhfallg lalasfaiyl
241 liqekpvwis lpfllsiiiv ykhgkavwet ekpaqiapmm pvivkcslvt nllfagvvva
301 qtlls
//