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1,4-dihydroxy-2-naphthoate polyprenyltransferase [Vibrio lentus]

GenBank: PMM22202.1

Identical Proteins FASTA Graphics 

LOCUS       PMM22202                 305 aa            linear   BCT 11-JAN-2018
DEFINITION  1,4-dihydroxy-2-naphthoate polyprenyltransferase [Vibrio lentus].
ACCESSION   PMM22202
VERSION     PMM22202.1
DBLINK      BioProject: PRJNA328102
            BioSample: SAMN05418061
DBSOURCE    accession MCZC01000046.1
KEYWORDS    .
SOURCE      Vibrio lentus
  ORGANISM  Vibrio lentus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (residues 1 to 305)
  AUTHORS   Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M.,
            Chang,W.K., VanInsberghe,D., Elsherbini,J., Sharma,R.S.,
            Cutler,M.B., Kelly,L. and Polz,M.F.
  TITLE     A major lineage of non-tailed dsDNA viruses as unrecognized killers
            of marine bacteria
  JOURNAL   Nature 554 (7690), 118-122 (2018)
   PUBMED   29364876
REFERENCE   2  (residues 1 to 305)
  AUTHORS   Kauffman,K., Arevalo,P. and Polz,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2016) Civil and Environmental Engineering,
            Massachusetts Institute of Technology, 77 Massachusetts Avenue,
            Cambridge, MA 02139, USA
COMMENT     Source DNA available from Martin Polz, 77 Massachusetts Ave.,
            Cambridge, MA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC GWB v. 8.0
            Genome Coverage       :: 103x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/10/2016 14:42:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,056
            CDS (total)                       :: 4,965
            Genes (coding)                    :: 4,888
            CDS (coding)                      :: 4,888
            Genes (RNA)                       :: 91
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 77
            Pseudo Genes (ambiguous residues) :: 2 of 77
            Pseudo Genes (frameshifted)       :: 32 of 77
            Pseudo Genes (incomplete)         :: 39 of 77
            Pseudo Genes (internal stop)      :: 20 of 77
            Pseudo Genes (multiple problems)  :: 16 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Vibrio lentus"
                     /strain="10N.261.48.C12"
                     /isolation_source="Filtered Seawater, 1-5 micron fraction"
                     /db_xref="taxon:136468"
                     /geo_loc_name="USA: Massachusetts, Nahant, Canoe Cove"
                     /collection_date="18-Sep-2010"
     Protein         1..305
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
     Region          7..301
                     /region_name="PRK06080"
                     /note="1,4-dihydroxy-2-naphthoate octaprenyltransferase;
                     Validated"
                     /db_xref="CDD:235695"
     CDS             1..305
                     /locus_tag="BCT57_10665"
                     /coded_by="MCZC01000046.1:71700..72617"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_017061151.1"
                     /note="catalyzes the formation of dimethylmenaquinone from
                     1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mkqslliwld aarpktlpla lvsiltgssl afandqfsls iallafltat llqilsnlan
       61 dygdavkgtd ndkrlgpmra mqsgavtaqt mkqaiilniv ftviaglili fhalsslesi
      121 lsfialgvla ivaaiaytvg nkpygyiglg dlsvfiffgl lgvsgtyflh tghvepslfl
      181 palgcglmav avlninnmrd iendsecgkr tmavrlgqrk akqyhfallg lalasfaiyl
      241 liqekpvwis lpfllsiiiv ykhgkavwet ekpaqiapmm pvivkcslvt nllfagvvva
      301 qtlls
//
Feature
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for MULTISPECIES: 1,4-dihydroxy-2-naphthoate polyprenyltransferase (WP_017104628.1).

More about the gene BCT95_RS00325

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