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GenBank: PUE88069.1
Identical Proteins FASTA Graphics
LOCUS PUE88069 332 aa linear BCT 23-APR-2018 DEFINITION ABC transporter permease [Escherichia sp. R8]. ACCESSION PUE88069 VERSION PUE88069.1 DBLINK BioProject: PRJNA433283 BioSample: SAMN08888774 DBSOURCE accession QAXQ01000009.1 KEYWORDS . SOURCE Escherichia sp. R8 ORGANISM Escherichia sp. R8 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (residues 1 to 332) AUTHORS Jiang,X. TITLE Prevalence of antibiotic resistance genes in antibiotic-resistant Escherichia sp. isolates in sewage JOURNAL Unpublished REFERENCE 2 (residues 1 to 332) AUTHORS Jiang,X. TITLE Direct Submission JOURNAL Submitted (10-APR-2018) Zhejiang Chinese Medical University, Zhejiang Chinese Medical University, 548 Binwen Road, Hangzhou, Zhejiang 310003, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Velvet v. APR-2018 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 212.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 04/12/2018 11:13:10 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,379 CDS (total) :: 5,273 Genes (coding) :: 5,014 CDS (coding) :: 5,014 Genes (RNA) :: 106 rRNAs :: 8, 2, 2 (5S, 16S, 23S) complete rRNAs :: 8 (5S) partial rRNAs :: 2, 2 (16S, 23S) tRNAs :: 80 ncRNAs :: 14 Pseudo Genes (total) :: 259 Pseudo Genes (ambiguous residues) :: 0 of 259 Pseudo Genes (frameshifted) :: 107 of 259 Pseudo Genes (incomplete) :: 128 of 259 Pseudo Genes (internal stop) :: 67 of 259 Pseudo Genes (multiple problems) :: 40 of 259 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..332 /organism="Escherichia sp. R8" /strain="R8" /isolation_source="sewage" /db_xref="taxon:2161825" /geo_loc_name="China: Taizhou" /collection_date="2017" Protein 1..332 /product="ABC transporter permease" Region 13..329 /region_name="AraH" /note="Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism]; COG1172" /db_xref="CDD:440785" CDS 1..332 /locus_tag="DBP04_05005" /coded_by="QAXQ01000009.1:49013..50011" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_002413568.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 msasslplpq gksvslkqfv srhineigll vviailylvf slnapgfisl nnqmnvlrda 61 atigiaawam tliiisgeid vsvgpmvafv svclafllqf evplaiacll vlllgalmgt 121 lagvlrgvfn vpsfvatlgl wsalrgmglf mtnalpvpid enevldwlgg qflgvpvsal 181 immvlfalfv fisrktafgr svfavggnat aaqlcginvr rvriliftls gllaavtgil 241 laarlgsgna gaanglefdv iaavvvggta lsggrgslfg tllgvlvitl ignglvllgi 301 nsffqqvvrg viivvavlan illtqrsska kr //
Whole sequence Selected region from: to:
Conserved Domains
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