U.S. flag

An official website of the United States government

ABC transporter permease [Escherichia sp. R8]

GenBank: PUE88069.1

Identical Proteins FASTA Graphics 

LOCUS       PUE88069                 332 aa            linear   BCT 23-APR-2018
DEFINITION  ABC transporter permease [Escherichia sp. R8].
ACCESSION   PUE88069
VERSION     PUE88069.1
DBLINK      BioProject: PRJNA433283
            BioSample: SAMN08888774
DBSOURCE    accession QAXQ01000009.1
KEYWORDS    .
SOURCE      Escherichia sp. R8
  ORGANISM  Escherichia sp. R8
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (residues 1 to 332)
  AUTHORS   Jiang,X.
  TITLE     Prevalence of antibiotic resistance genes in antibiotic-resistant
            Escherichia sp. isolates in sewage
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 332)
  AUTHORS   Jiang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2018) Zhejiang Chinese Medical University,
            Zhejiang Chinese Medical University, 548 Binwen Road, Hangzhou,
            Zhejiang 310003, China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. APR-2018
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 212.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/12/2018 11:13:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,379
            CDS (total)                       :: 5,273
            Genes (coding)                    :: 5,014
            CDS (coding)                      :: 5,014
            Genes (RNA)                       :: 106
            rRNAs                             :: 8, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 259
            Pseudo Genes (ambiguous residues) :: 0 of 259
            Pseudo Genes (frameshifted)       :: 107 of 259
            Pseudo Genes (incomplete)         :: 128 of 259
            Pseudo Genes (internal stop)      :: 67 of 259
            Pseudo Genes (multiple problems)  :: 40 of 259
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Escherichia sp. R8"
                     /strain="R8"
                     /isolation_source="sewage"
                     /db_xref="taxon:2161825"
                     /geo_loc_name="China: Taizhou"
                     /collection_date="2017"
     Protein         1..332
                     /product="ABC transporter permease"
     Region          13..329
                     /region_name="AraH"
                     /note="Ribose/xylose/arabinose/galactoside ABC-type
                     transport system, permease component [Carbohydrate
                     transport and metabolism]; COG1172"
                     /db_xref="CDD:440785"
     CDS             1..332
                     /locus_tag="DBP04_05005"
                     /coded_by="QAXQ01000009.1:49013..50011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002413568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 msasslplpq gksvslkqfv srhineigll vviailylvf slnapgfisl nnqmnvlrda
       61 atigiaawam tliiisgeid vsvgpmvafv svclafllqf evplaiacll vlllgalmgt
      121 lagvlrgvfn vpsfvatlgl wsalrgmglf mtnalpvpid enevldwlgg qflgvpvsal
      181 immvlfalfv fisrktafgr svfavggnat aaqlcginvr rvriliftls gllaavtgil
      241 laarlgsgna gaanglefdv iaavvvggta lsggrgslfg tllgvlvitl ignglvllgi
      301 nsffqqvvrg viivvavlan illtqrsska kr
//
1..332
/locus_tag="DBP04_05005"
/coded_by="QAXQ01000009.1:49013..50011"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_002413568.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
Feature PUE88069 : 1 segment
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.