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GenBank: RDA62741.1
Identical Proteins FASTA Graphics
LOCUS RDA62741 211 aa linear BCT 24-JUL-2018 DEFINITION hypothetical protein DVH09_20845 [Hafnia paralvei]. ACCESSION RDA62741 VERSION RDA62741.1 DBLINK BioProject: PRJNA481542 BioSample: SAMN09681893 DBSOURCE accession QPIT01000119.1 KEYWORDS . SOURCE Hafnia paralvei ORGANISM Hafnia paralvei Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Hafnia. REFERENCE 1 (residues 1 to 211) AUTHORS Zhang,S., Chaluvadi,S. and Bennetzen,J.L. TITLE Genome sequence comparisons of six Hafnia isolates from Sarracenia pitcher plants JOURNAL Unpublished REFERENCE 2 (residues 1 to 211) AUTHORS Zhang,S., Chaluvadi,S. and Bennetzen,J.L. TITLE Direct Submission JOURNAL Submitted (18-JUL-2018) Department of Genetics, University of Georgia, University of Georgia, Athens, GA 30602, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 300.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/19/2018 16:25:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,389 CDS (total) :: 4,308 Genes (coding) :: 4,223 CDS (coding) :: 4,223 Genes (RNA) :: 81 rRNAs :: 2, 2 (16S, 23S) partial rRNAs :: 2, 2 (16S, 23S) tRNAs :: 70 ncRNAs :: 7 Pseudo Genes (total) :: 85 Pseudo Genes (ambiguous residues) :: 0 of 85 Pseudo Genes (frameshifted) :: 43 of 85 Pseudo Genes (incomplete) :: 43 of 85 Pseudo Genes (internal stop) :: 29 of 85 Pseudo Genes (multiple problems) :: 28 of 85 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..211 /organism="Hafnia paralvei" /strain="C5" /isolation_source="pitcher plants" /host="Sarracenia" /db_xref="taxon:546367" /geo_loc_name="USA" /collection_date="06-Nov-2010" Protein 1..211 /product="hypothetical protein" Region 43..147 /region_name="IbrB_like" /note="immunoglobulin-binding regulator IbrB activates eib genes; cd16397" /db_xref="CDD:319255" CDS 1..211 /locus_tag="DVH09_20845" /coded_by="complement(QPIT01000119.1:83393..84028)" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008813342.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mkidtlvndl kvelesmpea ikiealnkir vmlhqvspfs nepidcvlwk siedvvandy 61 npnnvappek rllytsllrd gytqpivtaq ikdddkdyvi vdgfhrrela adrpklrkrv 121 rgylpvviln dlenekshri aatirhnrar gkhqisimsd ivrelyrlgw sdekiseelg 181 mdadevlrlk qisglmelfq drefseawtv k //
Whole sequence Selected region from: to:
Conserved Domains
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