U.S. flag

An official website of the United States government

hypothetical protein DW034_00805 [Bacteroides sp. AF39-10AT]

GenBank: RGP22765.1

Identical Proteins FASTA Graphics 

LOCUS       RGP22765                 580 aa            linear   BCT 31-AUG-2018
DEFINITION  hypothetical protein DW034_00805 [Bacteroides sp. AF39-10AT].
ACCESSION   RGP22765
VERSION     RGP22765.1
DBLINK      BioProject: PRJNA482748
            BioSample: SAMN09734681
DBSOURCE    accession QTLO01000001.1
KEYWORDS    .
SOURCE      Bacteroides sp. AF39-10AT
  ORGANISM  Bacteroides sp. AF39-10AT
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Bacteroides.
REFERENCE   1  (residues 1 to 580)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     A genome reference for cultivated species of the human gut
            microbiota
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 580)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2018) BGI-CNGB, BGI, No. 11, Beishan IZ., Yantian
            Dist., Shenzhen, Guangdong 518083, China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina Hiseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/07/2018 20:20:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,605
            CDS (total)                       :: 4,529
            Genes (coding)                    :: 4,358
            CDS (coding)                      :: 4,358
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 69
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 171
            Pseudo Genes (ambiguous residues) :: 4 of 171
            Pseudo Genes (frameshifted)       :: 96 of 171
            Pseudo Genes (incomplete)         :: 70 of 171
            Pseudo Genes (internal stop)      :: 46 of 171
            Pseudo Genes (multiple problems)  :: 41 of 171
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Bacteroides sp. AF39-10AT"
                     /strain="AF39-10AT"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:2292935"
                     /geo_loc_name="China: Shenzhen"
                     /collection_date="2014-02-01"
     Protein         1..580
                     /product="hypothetical protein"
     Region          104..362
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          369..>443
                     /region_name="PilN"
                     /note="Type IV pilus assembly protein PilN [Cell motility,
                     Extracellular structures]; COG3166"
                     /db_xref="CDD:442399"
     Region          <492..573
                     /region_name="CsgD"
                     /note="DNA-binding transcriptional regulator, CsgD family
                     [Transcription]; COG2771"
                     /db_xref="CDD:442052"
     CDS             1..580
                     /locus_tag="DW034_00805"
                     /coded_by="complement(QTLO01000001.1:188215..189957)"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007845153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mmrkylfigw dvwmvvilgi isscsqdkgt srlawgkyyl wsapdssyri lnaipfpdkl
       61 sveeqacyal lmtqamyrcg hkissdslin iavqyyssqg naddkasall ykgyiledlg
      121 qdnealyayk qaeeavktvk dlrihfliyt algningrya hyehslsyyr kaldlnlsvp
      181 awnamggeyi faplylaqgt pryneevklv ydkflglvnr mdftsqekiy yqwalkekdk
      241 qewdsaasfl lkamdytttv esrywydael aviykhlgkt elvdslrnra lkssrpllrs
      301 svykaiyqdl laagklskan eymqcyinel ellftsgsrt elfkiekryd ytallrqnde
      361 yrsrwsitll itvaavfslt lllwgswkff rrqkleilsh ykrdasmlqq qiddlqerie
      421 enqgeaknlq eqmqilekek kskeirirql eltfrskhis lpvesveaaq vylqivtkgt
      481 phytpaedrt kleywlnisr nrwaerlekl ypsltngekd icylfvvgls fdeiasllgv
      541 qsrsvnrvvy ricrkmgieq gskdefvaqi frlddcdtni
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.