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GenBank: RGP22765.1
Identical Proteins FASTA Graphics
LOCUS RGP22765 580 aa linear BCT 31-AUG-2018 DEFINITION hypothetical protein DW034_00805 [Bacteroides sp. AF39-10AT]. ACCESSION RGP22765 VERSION RGP22765.1 DBLINK BioProject: PRJNA482748 BioSample: SAMN09734681 DBSOURCE accession QTLO01000001.1 KEYWORDS . SOURCE Bacteroides sp. AF39-10AT ORGANISM Bacteroides sp. AF39-10AT Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides. REFERENCE 1 (residues 1 to 580) AUTHORS Zou,Y., Xue,W. and Luo,G. TITLE A genome reference for cultivated species of the human gut microbiota JOURNAL Unpublished REFERENCE 2 (residues 1 to 580) AUTHORS Zou,Y., Xue,W. and Luo,G. TITLE Direct Submission JOURNAL Submitted (01-AUG-2018) BGI-CNGB, BGI, No. 11, Beishan IZ., Yantian Dist., Shenzhen, Guangdong 518083, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 100x Sequencing Technology :: Illumina Hiseq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 08/07/2018 20:20:11 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,605 CDS (total) :: 4,529 Genes (coding) :: 4,358 CDS (coding) :: 4,358 Genes (RNA) :: 76 rRNAs :: 2, 1, 2 (5S, 16S, 23S) complete rRNAs :: 2, 1 (5S, 16S) partial rRNAs :: 2 (23S) tRNAs :: 69 ncRNAs :: 2 Pseudo Genes (total) :: 171 Pseudo Genes (ambiguous residues) :: 4 of 171 Pseudo Genes (frameshifted) :: 96 of 171 Pseudo Genes (incomplete) :: 70 of 171 Pseudo Genes (internal stop) :: 46 of 171 Pseudo Genes (multiple problems) :: 41 of 171 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..580 /organism="Bacteroides sp. AF39-10AT" /strain="AF39-10AT" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2292935" /geo_loc_name="China: Shenzhen" /collection_date="2014-02-01" Protein 1..580 /product="hypothetical protein" Region 104..362 /region_name="TPR" /note="Tetratricopeptide (TPR) repeat [General function prediction only]; COG0457" /db_xref="CDD:440225" Region 369..>443 /region_name="PilN" /note="Type IV pilus assembly protein PilN [Cell motility, Extracellular structures]; COG3166" /db_xref="CDD:442399" Region <492..573 /region_name="CsgD" /note="DNA-binding transcriptional regulator, CsgD family [Transcription]; COG2771" /db_xref="CDD:442052" CDS 1..580 /locus_tag="DW034_00805" /coded_by="complement(QTLO01000001.1:188215..189957)" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007845153.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mmrkylfigw dvwmvvilgi isscsqdkgt srlawgkyyl wsapdssyri lnaipfpdkl 61 sveeqacyal lmtqamyrcg hkissdslin iavqyyssqg naddkasall ykgyiledlg 121 qdnealyayk qaeeavktvk dlrihfliyt algningrya hyehslsyyr kaldlnlsvp 181 awnamggeyi faplylaqgt pryneevklv ydkflglvnr mdftsqekiy yqwalkekdk 241 qewdsaasfl lkamdytttv esrywydael aviykhlgkt elvdslrnra lkssrpllrs 301 svykaiyqdl laagklskan eymqcyinel ellftsgsrt elfkiekryd ytallrqnde 361 yrsrwsitll itvaavfslt lllwgswkff rrqkleilsh ykrdasmlqq qiddlqerie 421 enqgeaknlq eqmqilekek kskeirirql eltfrskhis lpvesveaaq vylqivtkgt 481 phytpaedrt kleywlnisr nrwaerlekl ypsltngekd icylfvvgls fdeiasllgv 541 qsrsvnrvvy ricrkmgieq gskdefvaqi frlddcdtni //
Whole sequence Selected region from: to:
Conserved Domains
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