LOCUS RNQ06004 451 aa linear BCT 14-NOV-2018
DEFINITION MFS transporter [Klebsiella pneumoniae].
ACCESSION RNQ06004
VERSION RNQ06004.1
DBLINK BioProject: PRJNA339843
BioSample: SAMN05956134
DBSOURCE accession MPYM04000004.1
KEYWORDS .
SOURCE Klebsiella pneumoniae
ORGANISM Klebsiella pneumoniae
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
Klebsiella.
REFERENCE 1 (residues 1 to 451)
AUTHORS Wright,M., Sutton,G., Venepally,P., Van,D., Rojas,L., Hujer,A.,
Hujer,K., Bonomo,R. and Adams,M.
TITLE Direct Submission
JOURNAL Submitted (21-NOV-2016) Informatics Core Services, JCVI, 9704
Medical Center Drive, Rockville, MD 20850, USA
REFERENCE 2 (residues 1 to 451)
AUTHORS Vanduin,D., Fouts,D., Wright,M., Sutton,G., Nguyen,K.,
Kreiswirth,B., Chen,L., Rojas,L., Hujer,A., Hujer,K., Bonomo,R. and
Adams,M.
TITLE Direct Submission
JOURNAL Submitted (18-OCT-2018) Informatics Core Services, JCVI, 9605
Medical Center Drive, Rockville, MD 20850, USA
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.1.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 304.4x
Sequencing Technology :: Illumina NextSeq 500
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/03/2018 10:58:07
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,510
CDS (total) :: 5,412
Genes (coding) :: 5,286
CDS (coding) :: 5,286
Genes (RNA) :: 98
rRNAs :: 8, 3, 8 (5S, 16S, 23S)
complete rRNAs :: 8 (5S)
partial rRNAs :: 3, 8 (16S, 23S)
tRNAs :: 68
ncRNAs :: 11
Pseudo Genes (total) :: 126
Pseudo Genes (ambiguous residues) :: 0 of 126
Pseudo Genes (frameshifted) :: 55 of 126
Pseudo Genes (incomplete) :: 78 of 126
Pseudo Genes (internal stop) :: 22 of 126
Pseudo Genes (multiple problems) :: 26 of 126
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..451
/organism="Klebsiella pneumoniae"
/strain="CRK0120"
/isolation_source="wound"
/host="Homo sapiens"
/db_xref="taxon:573"
/geo_loc_name="USA: Ohio"
/collection_date="2014"
Protein 1..451
/product="MFS transporter"
Region 25..435
/region_name="MFS_PcaK_like"
/note="4-hydroxybenzoate transporter PcaK and similar
transporters of the Major Facilitator Superfamily;
cd17365"
/db_xref="CDD:340923"
Site order(35..36,39..40,43,75,125..126,128..130,133,153,
156..157,160,264,267..268,271..273,276,303,307,357..358,
362,366,382,385..386,389..390,393)
/site_type="other"
/note="putative chemical substrate binding pocket
[chemical binding]"
/db_xref="CDD:340923"
CDS 1..451
/locus_tag="BL169_00001465"
/coded_by="MPYM04000004.1:17126..18481"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_004591417.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 mtkttidiqa finehpftry qwmilalcfi tvamdgfdta iigfiasdlv qewgveksal
61 gpvmsaalvg lavgaltagp ladrigrkkv limsivvfgg fslltafats lnqltllrfl
121 tglglgaamp naatlmseya perrrallvn lmfvgfpmgs slggflsawm iphygwqsvl
181 vlggvmplll avalifllpe svrylvvkqh paqriaailr hiaplpktve fvlreagqvk
241 eksaigvifs pryavgtvml cltyfmglli fylltswlpl liretgasms qasiitalfp
301 lgggigvlil galmdkinpn kvvavgwllt gvfvclvgfs tsslalmgvm vfiagsimng
361 aqssmpalaa gfyptqgrat gvawmlgigr fggilgafsg aflmqaqlsf etiftllaip
421 aflsafalli kyrvsksvpa ttdearslqk a
//