U.S. flag

An official website of the United States government

integrase [Escherichia coli]

GenBank: ROK32955.1

Identical Proteins FASTA Graphics 

LOCUS       ROK32955                 380 aa            linear   BCT 15-NOV-2018
DEFINITION  integrase [Escherichia coli].
ACCESSION   ROK32955
VERSION     ROK32955.1
DBLINK      BioProject: PRJDB4868
            BioSample: SAMD00052669
DBSOURCE    accession MCKZ01000056.1
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (residues 1 to 380)
  AUTHORS   Kanamori,H., Parobek,C.M., Juliano,J.J., Johnson,J.R.,
            Johnston,B.D., Johnson,T.J., Weber,D.J., Rutala,W.A. and
            Anderson,D.J.
  TITLE     Genomic Analysis of Multidrug-Resistant Escherichia coli from North
            Carolina Community Hospitals: Ongoing Circulation of
            CTX-M-Producing ST131-H30Rx and ST131-H30R1 Strains
  JOURNAL   Antimicrob. Agents Chemother. 61 (8), e00912-17 (2017)
   PUBMED   28584139
  REMARK    Publication Status: Online-Only
REFERENCE   2  (residues 1 to 380)
  AUTHORS   Kanamori,H., Parobek,C.M., Juliano,J., Weber,D.J. and Anderson,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUL-2016) Division of Infectious Diseases, University
            of North Carolina, 1001 West Wing CB #7600 101 Manning Drive,
            Chapel Hill, NC 27514, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2015
            Assembly Method        :: A5-miseq v. December-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 08/05/2016 14:52:54
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 3.3
            Genes (total)                     :: 5,383
            CDS (total)                       :: 5,284
            Genes (coding)                    :: 5,063
            CDS (coding)                      :: 5,063
            Genes (RNA)                       :: 99
            rRNAs                             :: 4, 5, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 1 (16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 221
            Pseudo Genes (ambiguous residues) :: 1 of 221
            Pseudo Genes (frameshifted)       :: 68 of 221
            Pseudo Genes (incomplete)         :: 154 of 221
            Pseudo Genes (internal stop)      :: 18 of 221
            Pseudo Genes (multiple problems)  :: 20 of 221
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Escherichia coli"
                     /strain="HE-MDREc49"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /geo_loc_name="USA"
                     /collection_date="2011"
     Protein         1..380
                     /product="integrase"
     Region          2..69
                     /region_name="Arm-DNA-bind_1"
                     /note="Bacteriophage lambda integrase, Arm DNA-binding
                     domain; pfam09003"
                     /db_xref="CDD:430365"
     Region          199..373
                     /region_name="INT_Lambda_C"
                     /note="C-terminal catalytic domain of Lambda integrase, a
                     tyrosine-based site-specific recombinase; cd00800"
                     /db_xref="CDD:271181"
     Site            order(199,202..203,205..206,216)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:271181"
     Site            order(228,332,335,355,364)
                     /site_type="active"
                     /db_xref="CDD:271181"
     CDS             1..380
                     /locus_tag="BFD50_09135"
                     /coded_by="MCKZ01000056.1:114596..115738"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_000741335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 maarprshki sipnlyckld krtgkvywqy khplsgrfhs lgtdeneakq vateantiia
       61 eqrtrqilsv nerlermkgr rsditvtewl dkyisiqedr lqhnelrpns yrqkgkpirl
      121 frehcgmqhl kditaldiae iidavkaegh nrmaqvvrmv lidvfkeaqh aghvppgfnp
      181 aqatkqprnr vnrqrlslpe wqaifdsvsr rqpylkcgml lalvtgqrlg dicnlkfsdi
      241 wddmlhitqe ktgsklaipl nlkcdalnit lrevisqcrd avvskylvhy rhttsqanrg
      301 dqvsantltt afkkarekcg ikweqgtapt fheqrslser lyreqgldtq kllghksrkm
      361 tdrynddrgk dwiivdikta
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.