LOCUS ROK32955 380 aa linear BCT 15-NOV-2018
DEFINITION integrase [Escherichia coli].
ACCESSION ROK32955
VERSION ROK32955.1
DBLINK BioProject: PRJDB4868
BioSample: SAMD00052669
DBSOURCE accession MCKZ01000056.1
KEYWORDS .
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE 1 (residues 1 to 380)
AUTHORS Kanamori,H., Parobek,C.M., Juliano,J.J., Johnson,J.R.,
Johnston,B.D., Johnson,T.J., Weber,D.J., Rutala,W.A. and
Anderson,D.J.
TITLE Genomic Analysis of Multidrug-Resistant Escherichia coli from North
Carolina Community Hospitals: Ongoing Circulation of
CTX-M-Producing ST131-H30Rx and ST131-H30R1 Strains
JOURNAL Antimicrob. Agents Chemother. 61 (8), e00912-17 (2017)
PUBMED 28584139
REMARK Publication Status: Online-Only
REFERENCE 2 (residues 1 to 380)
AUTHORS Kanamori,H., Parobek,C.M., Juliano,J., Weber,D.J. and Anderson,D.J.
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2016) Division of Infectious Diseases, University
of North Carolina, 1001 West Wing CB #7600 101 Manning Drive,
Chapel Hill, NC 27514, USA
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: DEC-2015
Assembly Method :: A5-miseq v. December-2015
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 10.0x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Date :: 08/05/2016 14:52:54
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Provider :: NCBI
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Annotation Software revision :: 3.3
Genes (total) :: 5,383
CDS (total) :: 5,284
Genes (coding) :: 5,063
CDS (coding) :: 5,063
Genes (RNA) :: 99
rRNAs :: 4, 5, 2 (5S, 16S, 23S)
complete rRNAs :: 4, 1, 1 (5S, 16S, 23S)
partial rRNAs :: 4, 1 (16S, 23S)
tRNAs :: 83
ncRNAs :: 5
Pseudo Genes (total) :: 221
Pseudo Genes (ambiguous residues) :: 1 of 221
Pseudo Genes (frameshifted) :: 68 of 221
Pseudo Genes (incomplete) :: 154 of 221
Pseudo Genes (internal stop) :: 18 of 221
Pseudo Genes (multiple problems) :: 20 of 221
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..380
/organism="Escherichia coli"
/strain="HE-MDREc49"
/host="Homo sapiens"
/db_xref="taxon:562"
/geo_loc_name="USA"
/collection_date="2011"
Protein 1..380
/product="integrase"
Region 2..69
/region_name="Arm-DNA-bind_1"
/note="Bacteriophage lambda integrase, Arm DNA-binding
domain; pfam09003"
/db_xref="CDD:430365"
Region 199..373
/region_name="INT_Lambda_C"
/note="C-terminal catalytic domain of Lambda integrase, a
tyrosine-based site-specific recombinase; cd00800"
/db_xref="CDD:271181"
Site order(199,202..203,205..206,216)
/site_type="other"
/note="dimer interface [polypeptide binding]"
/db_xref="CDD:271181"
Site order(228,332,335,355,364)
/site_type="active"
/db_xref="CDD:271181"
CDS 1..380
/locus_tag="BFD50_09135"
/coded_by="MCKZ01000056.1:114596..115738"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_000741335.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 maarprshki sipnlyckld krtgkvywqy khplsgrfhs lgtdeneakq vateantiia
61 eqrtrqilsv nerlermkgr rsditvtewl dkyisiqedr lqhnelrpns yrqkgkpirl
121 frehcgmqhl kditaldiae iidavkaegh nrmaqvvrmv lidvfkeaqh aghvppgfnp
181 aqatkqprnr vnrqrlslpe wqaifdsvsr rqpylkcgml lalvtgqrlg dicnlkfsdi
241 wddmlhitqe ktgsklaipl nlkcdalnit lrevisqcrd avvskylvhy rhttsqanrg
301 dqvsantltt afkkarekcg ikweqgtapt fheqrslser lyreqgldtq kllghksrkm
361 tdrynddrgk dwiivdikta
//