LOCUS RRW31076 431 aa linear BCT 11-DEC-2018
DEFINITION flavohemoglobin expression-modulating QEGLA motif protein
[Stutzerimonas stutzeri].
ACCESSION RRW31076
VERSION RRW31076.1
DBLINK BioProject: PRJNA497126
BioSample: SAMN10249001
DBSOURCE accession RHRP01000001.1
KEYWORDS .
SOURCE Stutzerimonas stutzeri (Pseudomonas stutzeri)
ORGANISM Stutzerimonas stutzeri
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Pseudomonadales; Pseudomonadaceae; Stutzerimonas.
REFERENCE 1 (residues 1 to 431)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Transmission dynamics of multidrug resistant bacteria on intensive
care unit surfaces
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 431)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Direct Submission
JOURNAL Submitted (17-OCT-2018) Computational and Systems Biology,
Washington University in St. Louis School of Medicine, 660 South
Euclid Avenue, St. Louis, MO 63110, USA
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.11.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 28x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/09/2018 18:56:24
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 4,164
CDS (total) :: 4,101
Genes (coding) :: 4,008
CDS (coding) :: 4,008
Genes (RNA) :: 63
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 56
ncRNAs :: 4
Pseudo Genes (total) :: 93
Pseudo Genes (ambiguous residues) :: 0 of 93
Pseudo Genes (frameshifted) :: 40 of 93
Pseudo Genes (incomplete) :: 45 of 93
Pseudo Genes (internal stop) :: 16 of 93
Pseudo Genes (multiple problems) :: 6 of 93
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..431
/organism="Stutzerimonas stutzeri"
/strain="PS_066"
/isolation_source="bedside light switch in hospital
intensive care unit"
/db_xref="taxon:316"
/geo_loc_name="Pakistan"
/collection_date="2016-03"
Protein 1..431
/product="flavohemoglobin expression-modulating QEGLA
motif protein"
Region 42..417
/region_name="DUF1704"
/note="Domain of unknown function (DUF1704); pfam08014"
/db_xref="CDD:429786"
CDS 1..431
/locus_tag="EGJ47_00725"
/coded_by="complement(RHRP01000001.1:146091..147386)"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_252387.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 mnsrnnldey qtivrglsdr iveaqtpvrv ldavkwddat rqaffaakgr elpqidrayy
61 egrplafdss akkqefqdie rditrqlgqf npvgqimrrm ckeyrmvirm leargtpdfg
121 misqelygaa sdafhagdpt ladlglmlsd ylnniadrgd lrdepknlta pqavellqkr
181 ldvvfgegeg virvfesdgi ladaaagady ikirsdalfn erdvralevh eglvhvgttl
241 ngqnqpictf lakgppsstv tqeglailme viafasyptr lrkltnrtra ihmaeegadf
301 levfaffreq gygddesysn asrvfrgstp aglpftkdls ylkgfimiyn yiqlavrkgq
361 leqipllfcg kttledmrtl rqlvdegmvv ppkylppqfq dlnalsawmc fsnflnhlsl
421 drieadyani l
//