LOCUS RSA44463 112 aa linear BCT 11-DEC-2018
DEFINITION glycine cleavage system protein H [Enterococcus faecium].
ACCESSION RSA44463
VERSION RSA44463.1
DBLINK BioProject: PRJNA497126
BioSample: SAMN10249158
DBSOURCE accession RHVC01000001.1
KEYWORDS .
SOURCE Enterococcus faecium
ORGANISM Enterococcus faecium
Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
Enterococcaceae; Enterococcus.
REFERENCE 1 (residues 1 to 112)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Transmission dynamics of multidrug resistant bacteria on intensive
care unit surfaces
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 112)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Direct Submission
JOURNAL Submitted (17-OCT-2018) Computational and Systems Biology,
Washington University in St. Louis School of Medicine, 660 South
Euclid Avenue, St. Louis, MO 63110, USA
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.11.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 171x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/09/2018 21:55:05
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,143
CDS (total) :: 3,087
Genes (coding) :: 2,929
CDS (coding) :: 2,929
Genes (RNA) :: 56
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 49
ncRNAs :: 4
Pseudo Genes (total) :: 158
Pseudo Genes (ambiguous residues) :: 2 of 158
Pseudo Genes (frameshifted) :: 48 of 158
Pseudo Genes (incomplete) :: 79 of 158
Pseudo Genes (internal stop) :: 50 of 158
Pseudo Genes (multiple problems) :: 20 of 158
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..112
/organism="Enterococcus faecium"
/strain="EF_313"
/isolation_source="washroom sink in hospital intensive
care unit"
/db_xref="taxon:1352"
/geo_loc_name="Pakistan"
/collection_date="2016-03"
Protein 1..112
/product="glycine cleavage system protein H"
Region 8..99
/region_name="GCS_H"
/note="Glycine cleavage H-protein. Glycine cleavage
H-proteins are part of the glycine cleavage system (GCS)
found in bacteria, archea and the mitochondria of
eukaryotes. GCS is a multienzyme complex consisting of 4
different components (P-, H-, T- and...; cd06848"
/db_xref="CDD:133457"
Site 61
/site_type="other"
/note="lipoyl attachment site [posttranslational
modification]"
/db_xref="CDD:133457"
CDS 1..112
/locus_tag="EGK13_00445"
/coded_by="RHVC01000001.1:84177..84515"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002375559.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 magkhlkkkd nlwilfngke ycvgltneaq eelgditfan lpkagqslkk deplieveae
61 kavnefaspl tgtvssvndk igedinilnd sdemnawils fkdvdpkefd el
//