U.S. flag

An official website of the United States government

glycine cleavage system protein H [Enterococcus faecium]

GenBank: RSA44463.1

Identical Proteins FASTA Graphics 

LOCUS       RSA44463                 112 aa            linear   BCT 11-DEC-2018
DEFINITION  glycine cleavage system protein H [Enterococcus faecium].
ACCESSION   RSA44463
VERSION     RSA44463.1
DBLINK      BioProject: PRJNA497126
            BioSample: SAMN10249158
DBSOURCE    accession RHVC01000001.1
KEYWORDS    .
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (residues 1 to 112)
  AUTHORS   D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
            Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
  TITLE     Transmission dynamics of multidrug resistant bacteria on intensive
            care unit surfaces
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 112)
  AUTHORS   D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
            Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2018) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 South
            Euclid Avenue, St. Louis, MO 63110, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 171x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 11/09/2018 21:55:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,143
            CDS (total)                       :: 3,087
            Genes (coding)                    :: 2,929
            CDS (coding)                      :: 2,929
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 158
            Pseudo Genes (ambiguous residues) :: 2 of 158
            Pseudo Genes (frameshifted)       :: 48 of 158
            Pseudo Genes (incomplete)         :: 79 of 158
            Pseudo Genes (internal stop)      :: 50 of 158
            Pseudo Genes (multiple problems)  :: 20 of 158
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..112
                     /organism="Enterococcus faecium"
                     /strain="EF_313"
                     /isolation_source="washroom sink in hospital intensive
                     care unit"
                     /db_xref="taxon:1352"
                     /geo_loc_name="Pakistan"
                     /collection_date="2016-03"
     Protein         1..112
                     /product="glycine cleavage system protein H"
     Region          8..99
                     /region_name="GCS_H"
                     /note="Glycine cleavage H-protein. Glycine cleavage
                     H-proteins are part of the glycine cleavage system (GCS)
                     found in bacteria, archea and the mitochondria of
                     eukaryotes. GCS is a multienzyme complex consisting of 4
                     different components (P-, H-, T- and...; cd06848"
                     /db_xref="CDD:133457"
     Site            61
                     /site_type="other"
                     /note="lipoyl attachment site [posttranslational
                     modification]"
                     /db_xref="CDD:133457"
     CDS             1..112
                     /locus_tag="EGK13_00445"
                     /coded_by="RHVC01000001.1:84177..84515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002375559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 magkhlkkkd nlwilfngke ycvgltneaq eelgditfan lpkagqslkk deplieveae
       61 kavnefaspl tgtvssvndk igedinilnd sdemnawils fkdvdpkefd el
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

  • RefSeq protein
    See the reference protein sequence for MULTISPECIES: glycine cleavage system protein H (WP_002291179.1).

More about the gene E6A31_RS02445

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.