LOCUS RSG57712 547 aa linear BCT 12-DEC-2018
DEFINITION AMP-binding protein [Acinetobacter baumannii].
ACCESSION RSG57712
VERSION RSG57712.1
DBLINK BioProject: PRJNA497126
BioSample: SAMN10248989
DBSOURCE accession RHZL01000088.1
KEYWORDS .
SOURCE Acinetobacter baumannii
ORGANISM Acinetobacter baumannii
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
calcoaceticus/baumannii complex.
REFERENCE 1 (residues 1 to 547)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Transmission dynamics of multidrug resistant bacteria on intensive
care unit surfaces
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 547)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Direct Submission
JOURNAL Submitted (17-OCT-2018) Computational and Systems Biology,
Washington University in St. Louis School of Medicine, 660 South
Euclid Avenue, St. Louis, MO 63110, USA
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.11.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/14/2018 02:46:43
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,945
CDS (total) :: 3,877
Genes (coding) :: 3,780
CDS (coding) :: 3,780
Genes (RNA) :: 68
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 61
ncRNAs :: 4
Pseudo Genes (total) :: 97
Pseudo Genes (ambiguous residues) :: 2 of 97
Pseudo Genes (frameshifted) :: 36 of 97
Pseudo Genes (incomplete) :: 37 of 97
Pseudo Genes (internal stop) :: 33 of 97
Pseudo Genes (multiple problems) :: 11 of 97
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..547
/organism="Acinetobacter baumannii"
/strain="AB_107"
/isolation_source="alcohol foam dispenser in hospital
intensive care unit"
/db_xref="taxon:470"
/geo_loc_name="Pakistan"
/collection_date="2016-02"
Protein 1..547
/product="AMP-binding protein"
Region 58..535
/region_name="Adenylate forming domain, Class I
superfamily"
/note="This family includes acyl- and aryl-CoA ligases, as
well as the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The adenylate-forming
enzymes catalyze an ATP-dependent two-step reaction to
first activate a carboxylate...; cl17068"
/db_xref="CDD:473059"
Site order(191,194..199,201..202)
/site_type="other"
/note="acyl-activating enzyme (AAE) consensus motif"
/db_xref="CDD:341228"
Site order(194,311..312,333..338,418,430,433,444,527)
/site_type="other"
/note="AMP binding site [chemical binding]"
/db_xref="CDD:341228"
Site order(194,234..235,283,285..286,289,311..312,333..338,418,
430,433,441..444,508)
/site_type="active"
/db_xref="CDD:341228"
Site order(234,285..286,289,311,441..443,502,508)
/site_type="other"
/note="CoA binding site [chemical binding]"
/db_xref="CDD:341228"
CDS 1..547
/locus_tag="EGU40_18330"
/coded_by="complement(RHZL01000088.1:5505..7148)"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000853293.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 mktlaeayqq fdltrlieeq lvghpqaina yvecceryvg kyktaliweg kngqaehytf
61 eqlaelsgkl anffkaqgiq agdciagllp rtpellitil atwrigaiyq plftafeaks
121 idhrittaqt klivtndeqr pklntlnvpv ivtvhqtgll sehdfdfwqs lqryseqcep
181 vnrsfdddfl mmftsgttgl aksvpvplka ilafkgymth avdlreedmf wnladpgway
241 glyygitgpl slghgiimde rsfnvdqaie likkykvsnl tgsptafrmf fgfkekfdps
301 ikqhlrvvss agepltpevv nwfkqdlevn ifdqygqtel gmvianhhal ehplkvgsag
361 faipghrfav ldqnyqelpt ggvgilamds eqsplmwfkg yggnnrkafv gkyyltgdtv
421 tlnehggidf vgradnvitt sgyrvgpfdv estlleceav lesavigkpd perteivkaf
481 vvlkpayqac etlkdklqqy vrnrlsrhay pkeiefvdsl pkttsgkiqr gllkqqeiak
541 mqqayas
//