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GenBank: RTM21001.1
Identical Proteins FASTA Graphics
LOCUS RTM21001 590 aa linear BCT 29-JUL-2019 DEFINITION SmdA family multidrug ABC transporter permease/ATP-binding protein [Enterobacter bugandensis]. ACCESSION RTM21001 VERSION RTM21001.1 DBLINK BioProject: PRJNA415108 BioSample: SAMN10525017 DBSOURCE accession RXSW01000004.1 KEYWORDS . SOURCE Enterobacter bugandensis ORGANISM Enterobacter bugandensis Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter. REFERENCE 1 (residues 1 to 590) AUTHORS Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z. TITLE The Batch Genome Submission of Enterobacter spp. strains JOURNAL Unpublished REFERENCE 2 (residues 1 to 590) AUTHORS Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z. TITLE Direct Submission JOURNAL Submitted (06-DEC-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.7 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 200x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 12/18/2018 23:50:24 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,589 CDSs (total) :: 4,509 Genes (coding) :: 4,446 CDSs (with protein) :: 4,446 Genes (RNA) :: 80 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1 (5S, 16S) partial rRNAs :: 1 (23S) tRNAs :: 70 ncRNAs :: 7 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 33 of 63 Pseudo Genes (incomplete) :: 29 of 63 Pseudo Genes (internal stop) :: 22 of 63 Pseudo Genes (multiple problems) :: 18 of 63 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..590 /organism="Enterobacter bugandensis" /strain="WCHEB090996" /host="Homo sapiens" /db_xref="taxon:881260" /geo_loc_name="China: Chengdu, Sichuan" /collection_date="2016-10" Protein 1..590 /product="SmdA family multidrug ABC transporter permease/ATP-binding protein" Region 35..590 /region_name="PRK10789" /note="SmdA family multidrug ABC transporter permease/ATP-binding protein" /db_xref="CDD:182732" CDS 1..590 /locus_tag="EKO15_08920" /coded_by="RXSW01000004.1:164259..166031" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_308529.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mrlfaqlswy frrewqrylg avalliiiai lqlippkvvg yvvdgvteqh yttarvlmwv 61 gtlvltaviv yllryvwrvl lfgasyqlav elredfyrql srqhpefylr hrtgdliara 121 tndvdrvvfa agegvltlvd slvmgcavli vmstqiswql tllallpmpi malainryge 181 qlherfklaq aafsslndrt qesmtsirmi kafgledrqs alfaadaadt gaknmrvari 241 darfdptiyv aigmanllai gggswmvvqg tltlgqltsf amylglmiwp mlalawmfni 301 vergsaaysr iramlaeapv vndgseavpe grgvmnvdvr kfvypqtehp vlenvsftlr 361 pgqmlgicgp tgsgkstvls llqrhfdvie gdirfhdipl anllldewrg rlavvsqtpf 421 lfsdtvanni alghpsatqe eiervarlas vhddilrlpq gyetevgerg vmlsggqkqr 481 isiarallln aeililddal savdgrtehq ilhnlrqwgd grtviisahr lsalteasei 541 lvlqhghiaq rgqhetlaeq pgwyrdmyry qqleaaldda peqdqeatna //
Whole sequence Selected region from: to:
Conserved Domains
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