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GenBank: RTM87682.1
Identical Proteins FASTA Graphics
LOCUS RTM87682 186 aa linear BCT 23-DEC-2018 DEFINITION fimbrial protein [Enterobacter roggenkampii]. ACCESSION RTM87682 VERSION RTM87682.1 DBLINK BioProject: PRJNA415108 BioSample: SAMN10525002 DBSOURCE accession RXSI01000025.1 KEYWORDS . SOURCE Enterobacter roggenkampii ORGANISM Enterobacter roggenkampii Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex. REFERENCE 1 (residues 1 to 186) AUTHORS Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z. TITLE The Batch Genome Submission of Enterobacter spp. strains JOURNAL Unpublished REFERENCE 2 (residues 1 to 186) AUTHORS Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z. TITLE Direct Submission JOURNAL Submitted (06-DEC-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.7 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 200x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 12/18/2018 22:46:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,703 CDSs (total) :: 4,620 Genes (coding) :: 4,514 CDSs (with protein) :: 4,514 Genes (RNA) :: 83 rRNAs :: 2, 2, 3 (5S, 16S, 23S) complete rRNAs :: 2 (5S) partial rRNAs :: 2, 3 (16S, 23S) tRNAs :: 69 ncRNAs :: 7 Pseudo Genes (total) :: 106 CDSs (without protein) :: 106 Pseudo Genes (ambiguous residues) :: 0 of 106 Pseudo Genes (frameshifted) :: 45 of 106 Pseudo Genes (incomplete) :: 58 of 106 Pseudo Genes (internal stop) :: 31 of 106 Pseudo Genes (multiple problems) :: 25 of 106 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..186 /organism="Enterobacter roggenkampii" /strain="WCHEN090037" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:1812935" /geo_loc_name="China: Chengdu, Sichuan" /collection_date="2016-08" Protein 1..186 /product="fimbrial protein" Region 5..186 /region_name="Fimbrial" /note="Fimbrial protein; cl01416" /db_xref="CDD:445401" CDS 1..186 /locus_tag="EKO00_21215" /coded_by="RXSI01000025.1:36237..36797" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015571893.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mftgkkvlla vamatlisgs alaaeqgsgk ikfkgvvida pcsiapdsvd kevdlgeitt 61 avinankkss pvavdinlen cqlddpgdet dtpitkvdvt ftssatdttd tslmtntyas 121 gaqnvgvrll dnaeanitlg sasevtllag satqtlhfka qmevlsgkta tpgqveatan 181 yvlayk //
Whole sequence Selected region from: to:
Conserved Domains
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