U.S. flag

An official website of the United States government

fimbrial protein [Enterobacter roggenkampii]

GenBank: RTM87682.1

Identical Proteins FASTA Graphics 

LOCUS       RTM87682                 186 aa            linear   BCT 23-DEC-2018
DEFINITION  fimbrial protein [Enterobacter roggenkampii].
ACCESSION   RTM87682
VERSION     RTM87682.1
DBLINK      BioProject: PRJNA415108
            BioSample: SAMN10525002
DBSOURCE    accession RXSI01000025.1
KEYWORDS    .
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (residues 1 to 186)
  AUTHORS   Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z.
  TITLE     The Batch Genome Submission of Enterobacter spp. strains
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 186)
  AUTHORS   Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/18/2018 22:46:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,703
            CDSs (total)                      :: 4,620
            Genes (coding)                    :: 4,514
            CDSs (with protein)               :: 4,514
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 45 of 106
            Pseudo Genes (incomplete)         :: 58 of 106
            Pseudo Genes (internal stop)      :: 31 of 106
            Pseudo Genes (multiple problems)  :: 25 of 106
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..186
                     /organism="Enterobacter roggenkampii"
                     /strain="WCHEN090037"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2016-08"
     Protein         1..186
                     /product="fimbrial protein"
     Region          5..186
                     /region_name="Fimbrial"
                     /note="Fimbrial protein; cl01416"
                     /db_xref="CDD:445401"
     CDS             1..186
                     /locus_tag="EKO00_21215"
                     /coded_by="RXSI01000025.1:36237..36797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015571893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mftgkkvlla vamatlisgs alaaeqgsgk ikfkgvvida pcsiapdsvd kevdlgeitt
       61 avinankkss pvavdinlen cqlddpgdet dtpitkvdvt ftssatdttd tslmtntyas
      121 gaqnvgvrll dnaeanitlg sasevtllag satqtlhfka qmevlsgkta tpgqveatan
      181 yvlayk
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.