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GenBank: RVQ18157.1
Identical Proteins FASTA Graphics
LOCUS RVQ18157 440 aa linear BCT 08-JAN-2019 DEFINITION phosphate ABC transporter permease PstA [Sinorhizobium meliloti]. ACCESSION RVQ18157 VERSION RVQ18157.1 DBLINK BioProject: PRJNA401434 BioSample: SAMN07640749 DBSOURCE accession RPNQ01000002.1 KEYWORDS . SOURCE Sinorhizobium meliloti (Rhizobium meliloti) ORGANISM Sinorhizobium meliloti Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium. REFERENCE 1 (residues 1 to 440) AUTHORS Epstein,B., Abou-Shanab,R.A.I., Shamseldin,A., Taylor,M.R., Guhlin,J., Burghardt,L.T., Nelson,M., Sadowsky,M.J. and Tiffin,P. TITLE Genome-Wide Association Analyses in the Model Rhizobium Ensifer meliloti JOURNAL mSphere 3 (5), e00386-18 (2018) PUBMED 30355664 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 440) AUTHORS Epstein,B., Guhlin,J., Nelson,M., Burghardt,L.T., Sadowsky,M.J. and Tiffin,P. TITLE Direct Submission JOURNAL Submitted (17-NOV-2018) Plant and Microbial Biology, University of Minnesota, 140 Gortner Lab, 1479 Gortner Ave, St. Paul, MN 55108, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.13.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 13.6310437891199x Sequencing Technology :: Illumina Miseq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/22/2018 06:53:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 6,880 CDSs (total) :: 6,826 Genes (coding) :: 6,369 CDSs (with protein) :: 6,369 Genes (RNA) :: 54 rRNAs :: 1, 1 (16S, 23S) complete rRNAs :: 1 (16S) partial rRNAs :: 1 (23S) tRNAs :: 48 ncRNAs :: 4 Pseudo Genes (total) :: 457 CDSs (without protein) :: 457 Pseudo Genes (ambiguous residues) :: 0 of 457 Pseudo Genes (frameshifted) :: 298 of 457 Pseudo Genes (incomplete) :: 232 of 457 Pseudo Genes (internal stop) :: 60 of 457 Pseudo Genes (multiple problems) :: 123 of 457 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..440 /organism="Sinorhizobium meliloti" /strain="USDA1008" /isolation_source="root nodule" /host="Medicago sativa" /db_xref="taxon:382" /geo_loc_name="USA: Maryland" /lat_lon="39.053281 N 76.711353 W" /collection_date="1933" Protein 1..440 /product="phosphate ABC transporter permease PstA" Region 21..173 /region_name="DUF3333" /note="Domain of unknown function (DUF3333); pfam11812" /db_xref="CDD:463357" Region 199..440 /region_name="PstA" /note="ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]; COG0581" /db_xref="CDD:440346" CDS 1..440 /gene="pstA" /locus_tag="CN063_03490" /coded_by="RPNQ01000002.1:174246..175568" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_384618.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mtefasptvr vstrpaasrr digikrryaa errfrafgms aiaiglffla vllwsvvskg 61 ytafqqttit lpiefsekvi dpkneratdp kqlytanypl lvrealvkql gldpskrplv 121 kqaadmvsas artqlrdivv adpsvigrti pvtllaeani dsafkgqidl svdetkrkvk 181 deqvawmnql aeagvlkksf ntgiftfgas srpeaagvgv allgslymml ivlvlslpig 241 vaasiyleef apknrltdli evninnlaav psivygllgl avfvnfagmp rsaalvgafv 301 ltlmtlptii iatraalkav ppsirsaalg lgaskmqtif hhvlplampg iltgtiigla 361 halgetapll ligmvafvvd fpgsplepst alpvqiymwa neaerafver tsgaiiilli 421 flifmnlgai llrrrferrw //
Whole sequence Selected region from: to:
Conserved Domains
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