U.S. flag

An official website of the United States government

phosphate ABC transporter permease PstA [Sinorhizobium meliloti]

GenBank: RVQ18157.1

Identical Proteins FASTA Graphics 

LOCUS       RVQ18157                 440 aa            linear   BCT 08-JAN-2019
DEFINITION  phosphate ABC transporter permease PstA [Sinorhizobium meliloti].
ACCESSION   RVQ18157
VERSION     RVQ18157.1
DBLINK      BioProject: PRJNA401434
            BioSample: SAMN07640749
DBSOURCE    accession RPNQ01000002.1
KEYWORDS    .
SOURCE      Sinorhizobium meliloti (Rhizobium meliloti)
  ORGANISM  Sinorhizobium meliloti
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (residues 1 to 440)
  AUTHORS   Epstein,B., Abou-Shanab,R.A.I., Shamseldin,A., Taylor,M.R.,
            Guhlin,J., Burghardt,L.T., Nelson,M., Sadowsky,M.J. and Tiffin,P.
  TITLE     Genome-Wide Association Analyses in the Model Rhizobium Ensifer
            meliloti
  JOURNAL   mSphere 3 (5), e00386-18 (2018)
   PUBMED   30355664
  REMARK    Publication Status: Online-Only
REFERENCE   2  (residues 1 to 440)
  AUTHORS   Epstein,B., Guhlin,J., Nelson,M., Burghardt,L.T., Sadowsky,M.J. and
            Tiffin,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2018) Plant and Microbial Biology, University of
            Minnesota, 140 Gortner Lab, 1479 Gortner Ave, St. Paul, MN 55108,
            USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.6310437891199x
            Sequencing Technology  :: Illumina Miseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 11/22/2018 06:53:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 6,880
            CDSs (total)                      :: 6,826
            Genes (coding)                    :: 6,369
            CDSs (with protein)               :: 6,369
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 457
            CDSs (without protein)            :: 457
            Pseudo Genes (ambiguous residues) :: 0 of 457
            Pseudo Genes (frameshifted)       :: 298 of 457
            Pseudo Genes (incomplete)         :: 232 of 457
            Pseudo Genes (internal stop)      :: 60 of 457
            Pseudo Genes (multiple problems)  :: 123 of 457
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Sinorhizobium meliloti"
                     /strain="USDA1008"
                     /isolation_source="root nodule"
                     /host="Medicago sativa"
                     /db_xref="taxon:382"
                     /geo_loc_name="USA: Maryland"
                     /lat_lon="39.053281 N 76.711353 W"
                     /collection_date="1933"
     Protein         1..440
                     /product="phosphate ABC transporter permease PstA"
     Region          21..173
                     /region_name="DUF3333"
                     /note="Domain of unknown function (DUF3333); pfam11812"
                     /db_xref="CDD:463357"
     Region          199..440
                     /region_name="PstA"
                     /note="ABC-type phosphate transport system, permease
                     component [Inorganic ion transport and metabolism];
                     COG0581"
                     /db_xref="CDD:440346"
     CDS             1..440
                     /gene="pstA"
                     /locus_tag="CN063_03490"
                     /coded_by="RPNQ01000002.1:174246..175568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_384618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mtefasptvr vstrpaasrr digikrryaa errfrafgms aiaiglffla vllwsvvskg
       61 ytafqqttit lpiefsekvi dpkneratdp kqlytanypl lvrealvkql gldpskrplv
      121 kqaadmvsas artqlrdivv adpsvigrti pvtllaeani dsafkgqidl svdetkrkvk
      181 deqvawmnql aeagvlkksf ntgiftfgas srpeaagvgv allgslymml ivlvlslpig
      241 vaasiyleef apknrltdli evninnlaav psivygllgl avfvnfagmp rsaalvgafv
      301 ltlmtlptii iatraalkav ppsirsaalg lgaskmqtif hhvlplampg iltgtiigla
      361 halgetapll ligmvafvvd fpgsplepst alpvqiymwa neaerafver tsgaiiilli
      421 flifmnlgai llrrrferrw
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

  • RefSeq protein
    See the reference protein sequence for MULTISPECIES: phosphate ABC transporter permease PstA (WP_003530184.1).

More about the gene pstA

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.