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peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB [Escherichia coli]

GenBank: TKT54416.1

Identical Proteins FASTA Graphics 

LOCUS       TKT54416                 230 aa            linear   BCT 11-MAY-2019
DEFINITION  peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB
            [Escherichia coli].
ACCESSION   TKT54416
VERSION     TKT54416.1
DBLINK      BioProject: PRJNA401000
            BioSample: SAMN09761790
DBSOURCE    accession QSMW02000001.1
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (residues 1 to 230)
  AUTHORS   Quinones,B., Lee,B.G., Yambao,J.C. and Silva,C.J.
  TITLE     Draft Genome Sequences of Escherichia coli O157:H7 Strains
            Recovered from a Major Produce-Production Region in California
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 230)
  AUTHORS   Quinones,B., Lee,B. and Yambao,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2018) Produce Safety and Microbiology Unit,
            USDA/ARS/WRRC/PSM, 800 Buchanan Street, Albany, CA 94710, USA
REFERENCE   3  (residues 1 to 230)
  AUTHORS   Quinones,B., Lee,B.G. and Yambao,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) Produce Safety and Microbiology Unit,
            USDA/ARS/WRRC/PSM, 800 Buchanan Street, Albany, CA 94710, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 136x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/06/2019 14:03:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,793
            CDSs (total)                      :: 5,659
            Genes (coding)                    :: 5,300
            CDSs (with protein)               :: 5,300
            Genes (RNA)                       :: 134
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 104
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 359
            CDSs (without protein)            :: 359
            Pseudo Genes (ambiguous residues) :: 0 of 359
            Pseudo Genes (frameshifted)       :: 210 of 359
            Pseudo Genes (incomplete)         :: 124 of 359
            Pseudo Genes (internal stop)      :: 71 of 359
            Pseudo Genes (multiple problems)  :: 38 of 359
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..230
                     /organism="Escherichia coli"
                     /strain="RM10641"
                     /isolation_source="feces"
                     /host="Bos taurus"
                     /db_xref="taxon:562"
                     /geo_loc_name="USA: California"
                     /collection_date="2009-11-27"
     Protein         1..230
                     /product="peroxyureidoacrylate/ureidoacrylate
                     amidohydrolase RutB"
                     /EC_number="3.5.1.110"
     Region          3..228
                     /region_name="RutB"
                     /note="pyrimidine utilization protein B; TIGR03614"
                     /db_xref="CDD:163356"
     Site            order(24,133,166)
                     /site_type="active"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:238245"
     Site            161..162
                     /site_type="active"
                     /note="conserved cis-peptide bond [active]"
                     /db_xref="CDD:238245"
     CDS             1..230
                     /gene="rutB"
                     /locus_tag="DXX74_019660"
                     /coded_by="complement(QSMW02000001.1:4054739..4055431)"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415531.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mttltarpea itfdpqqsal ivvdmqnaya tpggyldlag fdvsttrpvi aniqtavtaa
       61 raagmliiwf qngwdeqyve aggpgspnfh ksnalktmrk qpqlqgklla kgswdyqlvd
      121 elvpqpgdiv lpkprysgff ntpldsilrs rgirhlvfts iatnvcvest lrdgffleyf
      181 gvvledathq agpefvqkaa lfnietffgw vsdvetfcda lsptsfaria
//
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