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GenBank: TKT54416.1
Identical Proteins FASTA Graphics
LOCUS TKT54416 230 aa linear BCT 11-MAY-2019 DEFINITION peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB [Escherichia coli]. ACCESSION TKT54416 VERSION TKT54416.1 DBLINK BioProject: PRJNA401000 BioSample: SAMN09761790 DBSOURCE accession QSMW02000001.1 KEYWORDS . SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (residues 1 to 230) AUTHORS Quinones,B., Lee,B.G., Yambao,J.C. and Silva,C.J. TITLE Draft Genome Sequences of Escherichia coli O157:H7 Strains Recovered from a Major Produce-Production Region in California JOURNAL Unpublished REFERENCE 2 (residues 1 to 230) AUTHORS Quinones,B., Lee,B. and Yambao,J. TITLE Direct Submission JOURNAL Submitted (03-AUG-2018) Produce Safety and Microbiology Unit, USDA/ARS/WRRC/PSM, 800 Buchanan Street, Albany, CA 94710, USA REFERENCE 3 (residues 1 to 230) AUTHORS Quinones,B., Lee,B.G. and Yambao,J.C. TITLE Direct Submission JOURNAL Submitted (22-APR-2019) Produce Safety and Microbiology Unit, USDA/ARS/WRRC/PSM, 800 Buchanan Street, Albany, CA 94710, USA COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. 3 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 136x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/06/2019 14:03:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,793 CDSs (total) :: 5,659 Genes (coding) :: 5,300 CDSs (with protein) :: 5,300 Genes (RNA) :: 134 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 104 ncRNAs :: 8 Pseudo Genes (total) :: 359 CDSs (without protein) :: 359 Pseudo Genes (ambiguous residues) :: 0 of 359 Pseudo Genes (frameshifted) :: 210 of 359 Pseudo Genes (incomplete) :: 124 of 359 Pseudo Genes (internal stop) :: 71 of 359 Pseudo Genes (multiple problems) :: 38 of 359 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..230 /organism="Escherichia coli" /strain="RM10641" /isolation_source="feces" /host="Bos taurus" /db_xref="taxon:562" /geo_loc_name="USA: California" /collection_date="2009-11-27" Protein 1..230 /product="peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB" /EC_number="3.5.1.110" Region 3..228 /region_name="RutB" /note="pyrimidine utilization protein B; TIGR03614" /db_xref="CDD:163356" Site order(24,133,166) /site_type="active" /note="catalytic triad [active]" /db_xref="CDD:238245" Site 161..162 /site_type="active" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238245" CDS 1..230 /gene="rutB" /locus_tag="DXX74_019660" /coded_by="complement(QSMW02000001.1:4054739..4055431)" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415531.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mttltarpea itfdpqqsal ivvdmqnaya tpggyldlag fdvsttrpvi aniqtavtaa 61 raagmliiwf qngwdeqyve aggpgspnfh ksnalktmrk qpqlqgklla kgswdyqlvd 121 elvpqpgdiv lpkprysgff ntpldsilrs rgirhlvfts iatnvcvest lrdgffleyf 181 gvvledathq agpefvqkaa lfnietffgw vsdvetfcda lsptsfaria //
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Conserved Domains
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