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unconventional myosin-Vc isoform X1 [Rattus norvegicus]

NCBI Reference Sequence: XP_006243475.1

Identical Proteins FASTA Graphics 

LOCUS       XP_006243475            1749 aa            linear   ROD 22-FEB-2024
DEFINITION  unconventional myosin-Vc isoform X1 [Rattus norvegicus].
ACCESSION   XP_006243475
VERSION     XP_006243475.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_006243413.4
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..1749
                     /product="unconventional myosin-Vc isoform X1"
                     /calculated_mol_wt=203014
     Region          81..741
                     /region_name="MYSc_Myo5"
                     /note="class V myosin, motor domain; cd01380"
                     /db_xref="CDD:276831"
     Site            order(109..117,161..168,207..217,435..440)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276831"
     Site            109..117
                     /site_type="other"
                     /note="purine-binding loop"
                     /db_xref="CDD:276831"
     Site            161..168
                     /site_type="other"
                     /note="P-loop"
                     /db_xref="CDD:276831"
     Site            207..217
                     /site_type="other"
                     /note="switch I region"
                     /db_xref="CDD:276831"
     Site            435..443
                     /site_type="other"
                     /note="switch II region"
                     /db_xref="CDD:276831"
     Site            order(464..475,478..487)
                     /site_type="active"
                     /note="relay loop [active]"
                     /db_xref="CDD:276831"
     Site            674..684
                     /site_type="other"
                     /note="SH1 helix"
                     /db_xref="CDD:276831"
     Site            order(695..705,726..741)
                     /site_type="other"
                     /note="converter subdomain"
                     /db_xref="CDD:276831"
     Region          755..776
                     /region_name="IQ"
                     /note="Calmodulin-binding motif; smart00015"
                     /db_xref="CDD:197470"
     Region          831..851
                     /region_name="IQ"
                     /note="IQ calmodulin-binding motif; pfam00612"
                     /db_xref="CDD:459869"
     Region          <850..>1385
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1376..1743
                     /region_name="Myo5c_CBD"
                     /note="Cargo binding domain of myosin 5C; cd15476"
                     /db_xref="CDD:271260"
     CDS             1..1749
                     /gene="Myo5c"
                     /coded_by="XM_006243413.4:136..5385"
                     /db_xref="GeneID:315820"
                     /db_xref="RGD:1309994"
ORIGIN      
        1 mavaelyaqy nrvwipdpee vwksaeiakd yrvgdqvlrl lledgteldy pvdpgslppl
       61 rnpdilvgen dltalsylhe pavlhnlrir faeskliyty sgiilvamnp ykqlpiygda
      121 iihaysgqnm gdmdphifav aeeaykqmar nnrnqsiivs gesgagktvs aryamryfat
      181 vsksssnahv eekvlasnpi teavgnaktt rndnssrfgk yteisfdern qiiganmrty
      241 lleksrvvfq senernyhif yqlcasaqqs efkhlklgsa eefnytrmgg ntviegvddr
      301 admaetqktf tllgfkkdfq mdvfkilaai lhlgnvqvtt vgnersavse ddshlkvfce
      361 llgletikva qwlcnrkivt ssetvvkpmt rpqainarda lakkiyahlf dfiveqinqa
      421 lhfsgkqhtf igvldiygfe tfdvnsfeqf cinyaneklq qqfnlhvfkl eqeeymkedi
      481 pwtlidfydn qpvidlieak mgilelldee cllphgtden wlqklynnfv nknslfekpr
      541 msnssfiiqh fadkveyqce gfleknrdtv ydmlvevlra skfhlcaaff qespvpsspf
      601 gamitvksak qvikpntkhf rttvgnkfrs slfllmetln attphyvrci kpndeklpfe
      661 fdskrivqql racgvletir isaqsypsrw tylefysryg vlmtqqelsl sdkkevckvv
      721 lhrliqdsnq yqfgrtkiff ragqvaylek lrldklrqgc iviqkhvrgw lqrkkflrer
      781 raaltiqqyf rgqqtvrkai tatalkeawa aiilqkhcrg ylvrnlyqli rvatitiqah
      841 trgflarrry rkllqehkav ilqkyarawl arrrfqnirr fvlniqltyr vqrlqkkled
      901 qnrenhglve kltslaalrv gdlekvqrle aelekaathr hsyeekgrry rdsmeerlsk
      961 lqkhnaeles qreraeqslq erteelkekm dqltrqlfdd vqkeeqqrll leksfelktq
     1021 ayekeieslr eeikalkder tqlhhqleeg rvtsdslkge varlskqakt isefekeiel
     1081 lqaqkidvek hvqsqkremr ermsevtkql lesydiedvr srlsvedleh lnedgelwfa
     1141 yeglkkatrv leshfqsqkd cyekeiegln fkvvhlsqei nhlqklfree tdinesirhe
     1201 vtrltsenmm ipdfkqqise lerqkqdles rlkeqaekme gkqeepfshl nrgleeegrq
     1261 gkaprpflra veaqsethpe gkerlvgkiq epqeaikfpk kqaeaeeeve silrqeasrl
     1321 slenrdleee ldmkdrmirk lqdqvktltr tiekansvpl psgsreylgm leykkedetk
     1381 liqnlildlk prgvvvnmip glpahilfmc vryadslnda nmlkslmnsa ingikhvvke
     1441 hfedlemlsf wlsntchfln clkqysgeee fmkcnspqqn knclnnfdlt eyrqilsdva
     1501 iriyhqfilv mennlqpiiv pgmleyeslq gisglkptgf rkrsssiddt daytmtsilq
     1561 qlsyfystmc qngldpeivr qavkqlfyli gavtlnslll rkdmcscrkg mqircnisfl
     1621 eewlkdknlq nslaketlep lsqaawllqv kkttdsdake isqcctslsa vqiikilnsy
     1681 tpiddfekrv npsfvrkvqa llnnrgdssq lmldtkylfq vtfpftasph alemtqipss
     1741 fklgflrrl
//
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