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receptor-type tyrosine-protein phosphatase V isoform X3 [Rattus norvegicus]

NCBI Reference Sequence: XP_038946998.1

Identical Proteins FASTA Graphics 

LOCUS       XP_038946998            1653 aa            linear   ROD 22-FEB-2024
DEFINITION  receptor-type tyrosine-protein phosphatase V isoform X3 [Rattus
            norvegicus].
ACCESSION   XP_038946998
VERSION     XP_038946998.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_039091070.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086031) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..1653
                     /product="receptor-type tyrosine-protein phosphatase V
                     isoform X3"
                     /calculated_mol_wt=180378
     Region          49..110
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; smart00060"
                     /db_xref="CDD:214495"
     Region          <97..>335
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          <148..201
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          377..>749
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          950..1011
                     /region_name="PTP_tm"
                     /note="TM proximal of protein tyrosine phosphatase,
                     receptor type J; pfam18861"
                     /db_xref="CDD:465889"
     Region          1120..1349
                     /region_name="R-PTPc-V"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase V; cd14618"
                     /db_xref="CDD:350466"
     Region          1419..1635
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..1653
                     /gene="Ptprv"
                     /gene_synonym="Esp"
                     /coded_by="XM_039091070.2:325..5286"
                     /db_xref="GeneID:64576"
                     /db_xref="RGD:621123"
ORIGIN      
        1 mrplillaal lwlqgflaed dacsslegsp drqgggplls vnvsshgkst slflswvaae
       61 lggfdyalsl rsvnssgspe gqqlqahtne sgfefhglvp gsryqlkltv lrpcwqnvti
      121 tltartaptv vrglqlhsag sparleasws dapgdqdsyq lllyhlesqt lacnvsvspd
      181 tlsysfgdll pgtqyvlevi twagslhakt silqwtepvp pdhlalralg tsslqafwns
      241 segatsfrlm ltdllggtnt tavirqgvst htflhlspgt phelkicasa gphqiwgpsa
      301 tewtypsyps dlvltplrne lwaswkaglg ardgyvlkls gpmeststlg peecnavfpg
      361 plppghytlq lkvlagpyda wvegstwlae saalprevpg arlwldglea skqpgrrall
      421 ysddapgslg nisvpsgath vifcglvpga hyrvdiasst gdisqsisgy tsplppqsle
      481 visrsspsdl tiawgpapgq legykvtwhq dgsqrspgdl vdlgpdtlsl tlkslvpgsc
      541 ytvsawawag nlssdsqkih sctrpapptn lslgfahqpa alkaswyhpp ggrdafhlrl
      601 yrlrpltles ekvlpreaqn fswaqltagc efqvqlstlw gsersssana tgwtppsapt
      661 lvnvtsdapt qlqvswahvp ggrsryqvtl yqestrtats imgpkedgts flgltpgtky
      721 kveviswagp lytaaanvsa wtyplipnel lvsmqagsav vnlawpsgpl gqgachaqls
      781 daghlsweqp lklgqelfml rdltpghtis msvrcragpl qasthlvvls vepgpvedvl
      841 chpeatylal nwtmpagdvd vclvvverlv pgggthfvfq vntsgdalll pnlmpttsyr
      901 lsltvlgrns rwsravslvc stsaeawhpp elaeppqvel gtgmgvtvmr gmfgkddgqi
      961 qwygiiatin mtlaqpsrea inytwfsvva fsrlntpeti lafsafsepr asislaiipl
     1021 tvmlgavvgs ivivcavlcl lrwrclkgpr sekdgfskel mpynlwrthr pipihsfrqs
     1081 yeaksahahq tffqefeelk evgkdqprle aehpdniikn ryphvlpydh srvrltqlpg
     1141 ephsdyinan fipgyshtqe iiatqgplkk tledfwrlvw eqqvhviiml tvgmengrvl
     1201 cehywpanst pvthghitih llaeepedew trrefqlqhg teqkqrrvkq lqfttwpdhs
     1261 vpeapsslla fvelvqeqvq atqgkgpilv hcsagvgrtg tfvallrllr qleeekvadv
     1321 fntvyilrlh rplmiqtlsq yiflhsclln kilegppdss dsgpisvmdf aqacakraan
     1381 anagflkeyk llkqaikdgt gsllpppdyn qnsivsrrhs qeqfalveec pedsmleasl
     1441 fpggpsgcdh vvltgsagpk elwemvwehd ahvlvslglp dtkekppdiw pvemqpivtd
     1501 mvtvhrvses ntttgwpstl frvihgesgk erqvqclqfp csesgcelpa ntlltfldav
     1561 gqccfrgksk kpgtllshss kntnqlgtfl ameqllqqag tertvdvfnv alkqsqacgl
     1621 mtptleqyiy lynclnsall nglpragkwp apc
//
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