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Links from Protein

Items: 15

1.

O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS

Early annotation suggested this family, SepSecS, of several eukaryotic and archaeal proteins, was involved in antigen-antibodies responses in the liver and pancreas [1,2]. Structural studies show that the family is O-phosphoseryl-tRNA(Sec) selenium transferase, an enzyme involved in the synthesis of the amino acid selenocysteine (Sec). Sec is the only amino acid whose biosynthesis occurs on its cognate transfer RNA (tRNA). SepSecS catalyses the final step in the formation of the amino acid [3,4,5,6]. The early observation that autoantibodies isolated from patients with type I autoimmune hepatitis targeted a ribonucleoprotein complex containing tRNASec led to the identification and characterisation of the archaeal and the human SepSecS [2]. SepSecS forms its own branch in the family of fold-type I pyridoxal phosphate (PLP) enzymes that goes back to the last universal common ancestor which explains why the archaeal sequences Swiss:Q8TXK0 and Swiss:Q8TYR3 are annotated as being pyridoxal phosphate-dependent enzymes. [1]. 10801173. Identification of target antigen for SLA/LP autoantibodies in autoimmune hepatitis. Wies I, Brunner S, Henninger J, Herkel J, Kanzler S, Meyer zum Buschenfelde KH, Lohse AW;. Lancet 2000;355:1510-1515. [2]. 11481605. A bioinformatical approach suggests the function of the autoimmune hepatitis target antigen soluble liver antigen/liver pancreas. Kernebeck T, Lohse AW, Grotzinger J;. Hepatology 2001;34:230-233. [3]. 17194211. Biosynthesis of selenocysteine on its tRNA in eukaryotes. Xu XM, Carlson BA, Mix H, Zhang Y, Saira K, Glass RS, Berry MJ, Gladyshev VN, Hatfield DL;. PLoS Biol. 2007;5:e4. [4]. . TRUNCATED at 1650 bytes (from Pfam)

GO Terms:
Molecular Function:
transferase activity (GO:0016740)
Date:
2024-10-16
Family Accession:
NF017682.5
Method:
HMM
2.

beta-eliminating lyase-related protein

GO Terms:
Biological Process:
amino acid metabolic process (GO:0006520)
Molecular Function:
lyase activity (GO:0016829)
Date:
2024-08-14
Family Accession:
NF013384.5
Method:
HMM
3.

pyridoxal-dependent decarboxylase

GO Terms:
Molecular Function:
carbon-carbon lyase activity (GO:0016830)
Biological Process:
carboxylic acid metabolic process (GO:0019752)
Molecular Function:
pyridoxal phosphate binding (GO:0030170)
Date:
2024-08-14
Family Accession:
NF012503.5
Method:
HMM
4.

aminotransferase class V-fold PLP-dependent enzyme

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. (from Pfam)

Date:
2024-08-14
Family Accession:
NF012488.5
Method:
HMM
5.

aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme

GO Terms:
Biological Process:
biosynthetic process (GO:0009058)
Molecular Function:
pyridoxal phosphate binding (GO:0030170)
Date:
2024-08-14
Family Accession:
NF012382.5
Method:
HMM
6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
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8.
new record, indexing in progress
Family Accession:
9.
new record, indexing in progress
Family Accession:
10.
new record, indexing in progress
Family Accession:
11.
new record, indexing in progress
Family Accession:
12.
new record, indexing in progress
Family Accession:
13.
new record, indexing in progress
Family Accession:
14.
new record, indexing in progress
Family Accession:
15.

pyridoxal phosphate-dependent decarboxylase family protein

pyridoxal phosphate-dependent decarboxylase family protein is primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but it is also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters

Date:
2024-07-30
Family Accession:
10000562
Method:
Sparcle
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