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Links from Protein

Items: 18

1.

UvrB interaction domain

This domain is found in the UvrB protein where it interacts with the UvrA protein [2]. [1]. 18158267. Crystal structure of Bacillus stearothermophilus UvrA provides. insight into ATP-modulated dimerization, UvrB interaction, and. DNA binding.. Pakotiprapha D, Inuzuka Y, Bowman BR, Moolenaar GF, Goosen N,. Jeruzalmi D, Verdine GL;. Mol Cell. 2008;29:122-133.. [2]. 19287003. A structural model for the damage-sensing complex in bacterial. nucleotide excision repair.. Pakotiprapha D, Liu Y, Verdine GL, Jeruzalmi D;. J Biol Chem. 2009;284:12837-12844. (from Pfam)

Date:
2024-08-14

Family Accession:
NF037626.5
Method:
HMM

2.

Ultra-violet resistance protein B

This domain family is found in bacteria, archaea and eukaryotes, and is approximately 40 amino acids in length. The family is found in association with Pfam:PF00271, Pfam:PF02151, Pfam:PF04851. There are two conserved sequence motifs: YAD and RRR. This family is the C terminal region of the UvrB protein which conveys mutational resistance against UV light to various different species. [1]. 7721686. A promoter associated with the neisserial repeat can be used to. transcribe the uvrB gene from Neisseria gonorrhoeae.. Black CG, Fyfe JA, Davies JK;. J Bacteriol. 1995;177:1952-1958. (from Pfam)

Date:
2024-08-14

Family Accession:
NF023762.5
Method:
HMM

3.

DEAD/DEAH box helicase family protein

GO Terms:
Molecular Function:
DNA binding (GO:0003677)
Molecular Function:
ATP binding (GO:0005524)
Molecular Function:
hydrolase activity (GO:0016787)
Date:
2024-08-14

Family Accession:
NF016724.5
Method:
HMM

4.

UvrB/UvrC motif-containing protein

GO Terms:
Molecular Function:
protein binding (GO:0005515)
Date:
2024-08-14

Family Accession:
NF014232.5
Method:
HMM

5.

helicase-related protein

The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. (from Pfam)

Date:
2024-08-14

Family Accession:
NF012493.5
Method:
HMM

6.
new record, indexing in progress
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7.
new record, indexing in progress
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8.
new record, indexing in progress
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9.
new record, indexing in progress
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10.
new record, indexing in progress
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11.
new record, indexing in progress
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12.
new record, indexing in progress
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13.
new record, indexing in progress
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14.
new record, indexing in progress
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15.
new record, indexing in progress
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16.

excinuclease ABC subunit UvrB

excinuclease ABC subunit UvrB is part of the UvrABC repair system that catalyzes the recognition and processing of DNA lesions

Date:
2022-07-25

Family Accession:
11480575
Method:
Sparcle

17.

excinuclease ABC subunit UvrB

The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion

Gene:
uvrB
GO Terms:
Molecular Function:
DNA binding (GO:0003677)
Molecular Function:
protein binding (GO:0005515)
Molecular Function:
ATP binding (GO:0005524)
Biological Process:
nucleotide-excision repair (GO:0006289)
Cellular Component:
excinuclease repair complex (GO:0009380)
Molecular Function:
hydrolase activity (GO:0016787)
Molecular Function:
ATP hydrolysis activity (GO:0016887)
Date:
2021-07-21

Family Accession:
NF003673.1
Method:
HMM

18.

excinuclease ABC subunit UvrB

All proteins in this family for wich functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

Gene:
uvrB
GO Terms:
Molecular Function:
DNA binding (GO:0003677)
Molecular Function:
ATP binding (GO:0005524)
Biological Process:
nucleotide-excision repair (GO:0006289)
Cellular Component:
excinuclease repair complex (GO:0009380)
Molecular Function:
ATP hydrolysis activity (GO:0016887)
Date:
2024-05-16

Family Accession:
TIGR00631.1
Method:
HMM

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