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Items: 8

1.

SoxA/TsdA, cytochrome c domain

This entry represents the first cytochrome c domain of SoxA and TsdA proteins, heme proteins involved in sulfur oxidation [1-5]. Paper describing PDB structure 1h31. [1]. 12411478. Structural basis for the oxidation of thiosulfate by a sulfur cycle enzyme. Bamford VA, Bruno S, Rasmussen T, Appia-Ayme C, Cheesman MR, Berks BC, Hemmings AM;. EMBO J. 2002;21:5599-5610. Paper describing PDB structure 2c1d. [2]. 16297640. Structure of the cytochrome complex SoxXA of Paracoccus pantotrophus, a heme enzyme initiating chemotrophic sulfur oxidation. Dambe T, Quentmeier A, Rother D, Friedrich C, Scheidig AJ;. J Struct Biol. 2005;152:229-234. Paper describing PDB structure 4v2k. [3]. 25673696. Mechanism of thiosulfate oxidation in the SoxA family of cysteine-ligated cytochromes. Grabarczyk DB, Chappell PE, Eisel B, Johnson S, Lea SM, Berks BC;. J Biol Chem. 2015;290:9209-9221. Paper describing PDB structure 4wq7. [4]. 25673691. Thiosulfate dehydrogenase (TsdA) from Allochromatium vinosum: structural and functional insights into thiosulfate oxidation. Brito JA, Denkmann K, Pereira IA, Archer M, Dahl C;. J Biol Chem. 2015;290:9222-9238. Paper describing PDB structure 5lo9. [5]. 27694441. Electron Accepting Units of the Diheme Cytochrome c TsdA, a Bifunctional Thiosulfate Dehydrogenase/Tetrathionate Reductase. Kurth JM, Brito JA, Reuter J, Flegler A, Koch T, Franke T, Klein EM, Rowe SF, Butt JN, Denkmann K, Pereira IA, Archer M, Dahl C;. J Biol Chem. 2016;291:24804-24818. (from Pfam)

Date:
2024-10-16
Family Accession:
NF044772.2
Method:
HMM
2.

c-type cytochrome

GO Terms:
Molecular Function:
electron transfer activity (GO:0009055)
Molecular Function:
heme binding (GO:0020037)
Date:
2024-08-14
Family Accession:
NF024834.5
Method:
HMM
3.

c-type cytochrome

The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family. (from Pfam)

GO Terms:
Molecular Function:
electron transfer activity (GO:0009055)
Molecular Function:
heme binding (GO:0020037)
Date:
2024-08-14
Family Accession:
NF012264.5
Method:
HMM
4.
new record, indexing in progress
Family Accession:
5.
new record, indexing in progress
Family Accession:
6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
Family Accession:
8.
new record, indexing in progress
Family Accession:
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