U.S. flag

An official website of the United States government

Format
Items per page
Sort by

Send to:

Choose Destination

Links from Protein

Items: 16

1.

helix-turn-helix domain-containing protein

This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding. (from Pfam)

Date:
2024-08-14
Family Accession:
NF024940.5
Method:
HMM
2.

helix-turn-helix domain-containing protein

Date:
2024-08-14
Family Accession:
NF024954.5
Method:
HMM
3.

helix-turn-helix domain-containing protein

Date:
2024-08-14
Family Accession:
NF024776.5
Method:
HMM
4.

integrase core domain-containing protein

GO Terms:
Biological Process:
DNA integration (GO:0015074)
Date:
2024-08-14
Family Accession:
NF025063.5
Method:
HMM
5.

helix-turn-helix domain-containing protein

This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding. (from Pfam)

Date:
2024-08-14
Family Accession:
NF024908.5
Method:
HMM
6.

terminase gpP N-terminus-related DNA-binding protein

Protein hit regions in this family include the N-terminal region of NP_046758.1, the phage P2 terminase large subunit (a DNA-packing ATPase), as well as regions of various transposases, sigma factors, and other DNA-binding proteins.

GO Terms:
Molecular Function:
ATP binding (GO:0005524)
Biological Process:
viral capsid assembly (GO:0019069)
Date:
2024-11-08
Family Accession:
NF017834.5
Method:
HMM
7.

DDE-type integrase/transposase/recombinase

Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain Pfam:PF00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyses the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site [1]. [1]. 7801124. Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases [see comments]. Dyda F, Hickman AB, Jenkins TM, Engelman A, Craigie R, Davies DR;. Science 1994;266:1981-1986. (from Pfam)

GO Terms:
Biological Process:
DNA integration (GO:0015074)
Date:
2024-10-16
Family Accession:
NF012870.5
Method:
HMM
8.

IS481 family transposase

null

GO Terms:
Molecular Function:
transposase activity (GO:0004803)
Date:
2021-03-03
Family Accession:
NF033577.2
Method:
HMM
9.

IS3_IS407_combined.original: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012072.0
Method:
HMM
10.

IS3_IS3_ORF2.curated: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012068.0
Method:
HMM
11.

IS3_IS407_ORF2.curated: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012071.0
Method:
HMM
12.

IS21_ORF1.curated: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012055.0
Method:
HMM
13.

IS630.original: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012085.0
Method:
HMM
14.

IS481.original: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012077.0
Method:
HMM
15.

IS3_IS3_combined.original: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012069.0
Method:
HMM
16.

IS21_combined.original: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012057.0
Method:
HMM
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Find related data

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center