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MutS family domain IV
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF00488. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds in part with globular domain IV, which is involved in DNA binding, in Thermus aquaticus MutS as characterised in [4]. [1]. 9722634. Domain organization and functional analysis of Thermus thermophilus MutS protein [published erratum appears in Nucleic Acids Res 1998 Oct 15;26(20):following 4789]. Tachiki H, Kato R, Masui R, Hasegawa K, Itakura H, Fukuyama K, Kuramitsu S;. Nucleic Acids Res 1998;26:4153-4159. [2]. 8036718. Colon cancer and DNA repair: have mismatches met their match?. Jiricny J;. Trends Genet 1994;10:164-168. [3]. 8510668. The yeast gene MSH3 defines a new class of eukaryotic MutS homologues. New L, Liu K, Crouse GF;. Mol Gen Genet 1993;239:97-108. [4]. 11048710. Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Obmolova G, Ban C, Hsieh P, Yang W;. Nature 2000;407:703-710. (from Pfam)
MutS domain II
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF01624, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. This domain corresponds to domain II in Thermus aquaticus MutS as characterised in [4], and has similarity resembles RNAse-H-like domains (see Pfam:PF00075). [1]. 9722634. Domain organization and functional analysis of Thermus thermophilus MutS protein [published erratum appears in Nucleic Acids Res 1998 Oct 15;26(20):following 4789]. Tachiki H, Kato R, Masui R, Hasegawa K, Itakura H, Fukuyama K, Kuramitsu S;. Nucleic Acids Res 1998;26:4153-4159. [2]. 8036718. Colon cancer and DNA repair: have mismatches met their match?. Jiricny J;. Trends Genet 1994;10:164-168. [3]. 8510668. The yeast gene MSH3 defines a new class of eukaryotic MutS homologues. New L, Liu K, Crouse GF;. Mol Gen Genet 1993;239:97-108. [4]. 11048710. Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Obmolova G, Ban C, Hsieh P, Yang W;. Nature 2000;407:703-710. (from Pfam)
MutS domain III
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [4]. [1]. 9722634. Domain organization and functional analysis of Thermus thermophilus MutS protein [published erratum appears in Nucleic Acids Res 1998 Oct 15;26(20):following 4789]. Tachiki H, Kato R, Masui R, Hasegawa K, Itakura H, Fukuyama K, Kuramitsu S;. Nucleic Acids Res 1998;26:4153-4159. [2]. 8036718. Colon cancer and DNA repair: have mismatches met their match?. Jiricny J;. Trends Genet 1994;10:164-168. [3]. 8510668. The yeast gene MSH3 defines a new class of eukaryotic MutS homologues. New L, Liu K, Crouse GF;. Mol Gen Genet 1993;239:97-108. [4]. 11048710. Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Obmolova G, Ban C, Hsieh P, Yang W;. Nature 2000;407:703-710. (from Pfam)
MutS domain I
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with globular domain I, which is involved in DNA binding, in Thermus aquaticus MutS as characterised in [4]. [1]. 9722634. Domain organization and functional analysis of Thermus thermophilus MutS protein [published erratum appears in Nucleic Acids Res 1998 Oct 15;26(20):following 4789]. Tachiki H, Kato R, Masui R, Hasegawa K, Itakura H, Fukuyama K, Kuramitsu S;. Nucleic Acids Res 1998;26:4153-4159. [2]. 8036718. Colon cancer and DNA repair: have mismatches met their match?. Jiricny J;. Trends Genet 1994;10:164-168. [3]. 8510668. The yeast gene MSH3 defines a new class of eukaryotic MutS homologues. New L, Liu K, Crouse GF;. Mol Gen Genet 1993;239:97-108. [4]. 11048710. Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Obmolova G, Ban C, Hsieh P, Yang W;. Nature 2000;407:703-710. (from Pfam)
MutS-related protein
This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterised in [4], which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. [1]. 9722634. Domain organization and functional analysis of Thermus thermophilus MutS protein [published erratum appears in Nucleic Acids Res 1998 Oct 15;26(20):following 4789]. Tachiki H, Kato R, Masui R, Hasegawa K, Itakura H, Fukuyama K, Kuramitsu S;. Nucleic Acids Res 1998;26:4153-4159. [2]. 8036718. Colon cancer and DNA repair: have mismatches met their match?. Jiricny J;. Trends Genet 1994;10:164-168. [3]. 8510668. The yeast gene MSH3 defines a new class of eukaryotic MutS homologues. New L, Liu K, Crouse GF;. Mol Gen Genet 1993;239:97-108. [4]. 11048710. Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Obmolova G, Ban C, Hsieh P, Yang W;. Nature 2000;407:703-710. (from Pfam)
DNA mismatch repair protein MutS
Performs the mismatch recognition step during the DNA repair process
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