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Links from Protein

Items: 15

1.

methyltransferase domain-containing protein

This family appears to have methyltransferase activity. (from Pfam)

Date:
2024-08-14

Family Accession:
NF025217.5
Method:
HMM

2.

methyltransferase domain-containing protein

This family appears to be a methyltransferase domain. (from Pfam)

Date:
2024-08-14

Family Accession:
NF025033.5
Method:
HMM

3.

tRNA (Uracil-5-)-methyltransferase

This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity [1]. [1]. 12003492. Dual function of the tRNA(m(5)U54)methyltransferase in tRNA maturation. Johansson MJ, Bystrom AS;. RNA 2002;8:324-335. (from Pfam)

GO Terms:
Biological Process:
RNA processing (GO:0006396)
Molecular Function:
RNA methyltransferase activity (GO:0008173)
Date:
2024-10-16

Family Accession:
NF017743.5
Method:
HMM

4.

methyltransferase

This domain is found in ribosomal RNA small subunit methyltransferase C (eg Swiss:P44453) as well as other methyltransferases (eg Swiss:Q53742). (from Pfam)

GO Terms:
Molecular Function:
methyltransferase activity (GO:0008168)
Date:
2024-08-14

Family Accession:
NF017026.5
Method:
HMM

5.

TRAM domain-containing protein

This small domain has no known function. However it may perform a nucleic acid binding role (Bateman A. unpublished observation). [1]. 11313137. TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes. Anantharaman V, Koonin EV, Aravind L;. FEMS Microbiol Lett 2001;197:215-221. (from Pfam)

Date:
2024-10-16

Family Accession:
NF014047.5
Method:
HMM

6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
Family Accession:
8.
new record, indexing in progress
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9.
new record, indexing in progress
Family Accession:
10.
new record, indexing in progress
Family Accession:
11.
new record, indexing in progress
Family Accession:
12.
new record, indexing in progress
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13.
new record, indexing in progress
Family Accession:
14.
new record, indexing in progress
Family Accession:
15.

23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

Gene:
rlmD
GO Terms:
Molecular Function:
rRNA methyltransferase activity (GO:0008649)
Date:
2023-06-23

Family Accession:
TIGR00479.1
Method:
HMM

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