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Links from Protein

Items: 14

1.

substrate-binding domain-containing protein

This domain is found in a variety of transcriptional regulatory proteins. It is related to bacterial periplasmic binding proteins, although this domain is unlikely to be found in the periplasm. This domain acts as a sensor binding small molecule ligands that the DNA-binding domain responds to. This domain recognises Sugars, sugar phosphates, sugar acids and purines (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). (from Pfam)

Date:
2024-08-14
Family Accession:
NF024770.5
Method:
HMM
2.

substrate-binding domain-containing protein

This domain is found in a variety of bacterial periplasmic binding proteins. This domain recognises fructose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). (from Pfam)

Date:
2024-08-14
Family Accession:
NF024799.5
Method:
HMM
3.

LacI family DNA-binding transcriptional regulator

GO Terms:
Molecular Function:
DNA binding (GO:0003677)
Biological Process:
regulation of DNA-templated transcription (GO:0006355)
Date:
2024-08-14
Family Accession:
NF012576.5
Method:
HMM
4.

Periplasmic binding proteins and sugar binding domain of LacI family

This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (Pfam:PF00356). [1]. 1583688. 1.7 A X-ray structure of the periplasmic ribose receptor from Escherichia coli. Mowbray SL, Cole LB;. J Mol Biol 1992;225:155-175. [2]. 8638105. Crystal structure of the lactose operon repressor and its complexes with DNA and inducer. Lewis M, Chang G, Horton NC, Kercher MA, Pace HC, Schumacher MA, Brennan RG, Lu P;. Science 1996;271:1247-1254. (from Pfam)

Date:
2024-10-16
Family Accession:
NF012742.5
Method:
HMM
5.
new record, indexing in progress
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6.
new record, indexing in progress
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new record, indexing in progress
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new record, indexing in progress
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new record, indexing in progress
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new record, indexing in progress
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11.
new record, indexing in progress
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new record, indexing in progress
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13.

DNA-binding transcriptional regulator CytR

DNA-binding transcriptional regulator CytR functions as a regulator of transport and utilization of nucleosides; CytR functions in a complex with a multifunctional transcription factor, CRP (cAMP receptor protein)

Date:
2018-08-10
Family Accession:
11485164
Method:
Sparcle
14.

DNA-binding transcriptional regulator CytR

Negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins

Gene:
cytR
GO Terms:
Molecular Function:
DNA binding (GO:0003677)
Biological Process:
regulation of DNA-templated transcription (GO:0006355)
Date:
2021-10-20
Family Accession:
NF008269.0
Method:
HMM
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