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Links from Protein

Items: 9

1.

peptidase dimerization domain-containing protein

This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases [1]. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification [2]. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases. [1]. 9083113. Crystal structure of carboxypeptidase G2, a bacterial enzyme with applications in cancer therapy. Rowsell S, Pauptit RA, Tucker AD, Melton RG, Blow DM, Brick P;. Structure 1997;5:337-347. [2]. 7674922. Evolutionary families of metallopeptidases. Rawlings ND, Barrett AJ;. Meth Enzymol 1995;248:183-228. (from Pfam)

Date:
2024-10-16
Family Accession:
NF019307.5
Method:
HMM
2.

M20/M25/M40 family metallo-hydrolase

This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification [1]. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases. [1]. 7674922. Evolutionary families of metallopeptidases. Rawlings ND, Barrett AJ;. Meth Enzymol 1995;248:183-228. (from Pfam)

GO Terms:
Molecular Function:
hydrolase activity (GO:0016787)
Date:
2024-10-16
Family Accession:
NF013696.5
Method:
HMM
3.
new record, indexing in progress
Family Accession:
4.
new record, indexing in progress
Family Accession:
5.
new record, indexing in progress
Family Accession:
6.
new record, indexing in progress
Family Accession:
7.

succinyl-diaminopimelate desuccinylase

succinyl-diaminopimelate desuccinylase catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate

Date:
2023-02-16
Family Accession:
11486346
Method:
Sparcle
8.

succinyl-diaminopimelate desuccinylase

Catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate

Gene:
dapE
GO Terms:
Molecular Function:
succinyl-diaminopimelate desuccinylase activity (GO:0009014)
Biological Process:
lysine biosynthetic process via diaminopimelate (GO:0009089)
Date:
2021-07-23
Family Accession:
NF009557.0
Method:
HMM
9.

succinyl-diaminopimelate desuccinylase

This HMM describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum (SP:Q59284), and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.

Gene:
dapE
GO Terms:
Molecular Function:
succinyl-diaminopimelate desuccinylase activity (GO:0009014)
Biological Process:
lysine biosynthetic process via diaminopimelate (GO:0009089)
Date:
2021-04-27
Family Accession:
TIGR01246.1
Method:
HMM
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