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Links from Protein

Items: 5

1.

pseudouridine synthase

Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD Swiss:P33643, a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA [1]. [1]. 7493321. A dual-specificity pseudouridine synthase: an Escherichia coli synthase purified and cloned on the basis of its specificity for psi 746 in 23S RNA is also specific for psi 32 in tRNA(phe). Wrzesinski J, Nurse K, Bakin A, Lane BG, Ofengand J;. RNA 1995;1:437-448. (from Pfam)

GO Terms:
Biological Process:
pseudouridine synthesis (GO:0001522)
Molecular Function:
RNA binding (GO:0003723)
Biological Process:
RNA modification (GO:0009451)
Molecular Function:
pseudouridine synthase activity (GO:0009982)
Date:
2024-10-16
Family Accession:
NF013045.5
Method:
HMM
2.
new record, indexing in progress
Family Accession:
3.
new record, indexing in progress
Family Accession:
4.

RluA family pseudouridine synthase

RluA family pseudouridine synthase catalyzes the isomerization of specific uridines in rRNA or tRNA to pseudouridines

Date:
2024-04-17
Family Accession:
11426207
Method:
Sparcle
5.

RluA family pseudouridine synthase

In E. coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917, RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homolog from E. coli outside this family, TruC (SP|Q46918), modifies uracil-65 in transfer RNAs to pseudouridine.

GO Terms:
Biological Process:
pseudouridine synthesis (GO:0001522)
Molecular Function:
RNA binding (GO:0003723)
Biological Process:
RNA modification (GO:0009451)
Molecular Function:
pseudouridine synthase activity (GO:0009982)
Date:
2024-05-30
Family Accession:
TIGR00005.1
Method:
HMM
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