Protein Family Models for Protein (Select 489306003) - Protein Family Models

Select item 4127081.

Diaminopimelate epimerase contains two domains of the same alpha/beta fold, both contained in this family. [1]. 9843410. Structural symmetry: the three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase. Cirilli M, Zheng R, Scapin G, Blanchard JS;. Biochemistry 1998;37:16452-16458. (from Pfam)

GO Terms:

Molecular Function:: diaminopimelate epimerase activity (GO:0008837)

Biological Process:: lysine biosynthetic process via diaminopimelate (GO:0009089)

Date:: 2024-10-16

Family Accession:: NF013813.5
Method:: HMM

Select item 4126642.

PhzF family phenazine biosynthesis protein

PhzC/PhzF is involved in dimerisation of two 2,3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens [1]. This family also contains Swiss:P28176, though there is no significant sequence similarity to Pfam:PF00303 members. This family appears to be distantly related to Pfam:PF01678, including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesised to be active site residues (Bateman A pers obs). [1]. 11562236. Phenazine biosynthesis in Pseudomonas fluorescens: branchpoint from the primary shikimate biosynthetic pathway and role of phenazine-1,6-dicarboxylic acid. McDonald M, Mavrodi DV, Thomashow LS, Floss HG;. J Am Chem Soc 2001;123:9459-9460. (from Pfam)

GO Terms:

Molecular Function:: catalytic activity (GO:0003824)

Biological Process:: biosynthetic process (GO:0009058)

Date:: 2024-10-16

Family Accession:: NF014609.5
Method:: HMM

Select item 3897603.

new record, indexing in progress

Family Accession:

Select item 3895344.

new record, indexing in progress

Family Accession:

Select item 3494155.

new record, indexing in progress

Family Accession:

Select item 3488336.

new record, indexing in progress

Family Accession:

Select item 912417.

diaminopimelate epimerase

diaminopimelate epimerase catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP)

Date:: 2024-05-23

Family Accession:: 11415715
Method:: Sparcle

Select item 216608.

diaminopimelate epimerase

Gene:: dapF

GO Terms:

Molecular Function:: diaminopimelate epimerase activity (GO:0008837)

Biological Process:: lysine biosynthetic process via diaminopimelate (GO:0009089)

Date:: 2021-05-12

Family Accession:: TIGR00652.1
Method:: HMM

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