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Links from Protein

Items: 19

1.

KH domain-containing protein

GO Terms:
Molecular Function:
RNA binding (GO:0003723)
Date:
2024-08-14

Family Accession:
NF019275.5
Method:
HMM

2.

AIG1 family

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. [1]. 8742710. Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes. Reuber TL, Ausubel FM;. Plant Cell 1996;8:241-249. (from Pfam)

GO Terms:
Molecular Function:
GTP binding (GO:0005525)
Date:
2024-10-16

Family Accession:
NF016435.5
Method:
HMM

3.

FeoB small GTPase domain-containing protein

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions [1]. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [1]. [1]. 8407793. Characterization of the ferrous iron uptake system of Escherichia coli. Kammler M, Schon C, Hantke K;. J Bacteriol 1993;175:6212-6219. (from Pfam)

GO Terms:
Molecular Function:
GTP binding (GO:0005525)
Date:
2024-10-16

Family Accession:
NF014474.5
Method:
HMM

4.

GTPase

This HMM identifies the P-loop-containing domain of large numbers of GTPases with ribosome-associated functions, including many involved in ribosome maturation (Der, Era, etc), ribosome rescue (HflX), and protein translation (InfB, Tuf, PrfC).

GO Terms:
Molecular Function:
GTP binding (GO:0005525)
Date:
2024-10-16

Family Accession:
NF014036.5
Method:
HMM

5.

GTP-binding protein

This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Cryoelectron microscopy structure. [1]. 9311785. Visualization of elongation factor Tu on the Escherichia coli ribosome. Stark H, Rodnina MV, Rinke-Appel J, Brimacombe R, Wintermeyer W, van Heel M;. Nature 1997;389:403-406. (from Pfam)

GO Terms:
Molecular Function:
GTPase activity (GO:0003924)
Molecular Function:
GTP binding (GO:0005525)
Date:
2024-10-16

Family Accession:
NF012239.5
Method:
HMM

6.
new record, indexing in progress
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new record, indexing in progress
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new record, indexing in progress
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13.
new record, indexing in progress
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14.
new record, indexing in progress
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15.
new record, indexing in progress
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16.

GTPase Era

GTPase Era is an essential protein that binds the 16S rRNA of the 30S subunit, couples cell growth with cytokinesis, and plays a role in cell division and energy metabolism

Date:
2023-03-03

Family Accession:
11477992
Method:
Sparcle

17.

GTPase Era

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

Gene:
era
GO Terms:
Molecular Function:
RNA binding (GO:0003723)
Molecular Function:
GTP binding (GO:0005525)
Date:
2024-05-14

Family Accession:
TIGR00436.1
Method:
HMM

18.

GTP-binding protein

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

GO Terms:
Molecular Function:
GTP binding (GO:0005525)
Date:
2022-03-28

Family Accession:
TIGR00231.1
Method:
HMM

19.

GTPase Era

Gene:
era
GO Terms:
Molecular Function:
RNA binding (GO:0003723)
Molecular Function:
GTP binding (GO:0005525)
Date:
2021-07-22

Family Accession:
NF000908.1
Method:
HMM

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