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Links from Protein

Items: 15

1.

PDZ domain-containing protein

This entry represents the PDZ domain from a wide variety of proteins. (from Pfam)

Date:
2024-08-14

Family Accession:
NF036497.5
Method:
HMM

2.

PDZ domain-containing protein

GO Terms:
Molecular Function:
protein binding (GO:0005515)
Date:
2024-08-14

Family Accession:
NF024578.5
Method:
HMM

3.

S16 family serine protease

The Lon serine proteases must hydrolyse ATP to degrade protein substrates. In Escherichia coli, these proteases are involved in turnover of intracellular proteins, including abnormal proteins following heat-shock. The active site for protease activity resides in a C-terminal domain. The Lon proteases are classified as family S16 in Merops. [1]. 12208506. Domain structure and ATP-induced conformational changes in Escherichia coli protease Lon revealed by limited proteolysis and autolysis. Vasilyeva OV, Kolygo KB, Leonova YF, Potapenko NA, Ovchinnikova TV;. FEBS Lett 2002;526:66-70. (from Pfam)

GO Terms:
Molecular Function:
ATP-dependent peptidase activity (GO:0004176)
Molecular Function:
serine-type endopeptidase activity (GO:0004252)
Biological Process:
proteolysis (GO:0006508)
Date:
2024-10-16

Family Accession:
NF017200.5
Method:
HMM

4.

PDZ domain-containing protein

PDZ domains are found in diverse signaling proteins. Review article. [1]. 9204764. PDZ domains: targeting signalling molecules to sub-membranous sites. Ponting CP, Phillips C, Davies KE, Blake DJ. Bioessays 1997;19:469-479. [2]. 8674113. Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ. Doyle DA, Lee A, Lewis J, Kim E, Sheng M, MacKinnon R;. Cell. 1996;85:1067-1076. Extension of PDZ family. [3]. 9041651. Evidence for PDZ domains in bacteria, yeast, and plants. Ponting CP;. Protein Sci 1997;6:464-468. [4]. 19738200. Rapid evolution of functional complexity in a domain family. Ernst A, Sazinsky SL, Hui S, Currell B, Dharsee M, Seshagiri S, Bader GD, Sidhu SS;. Sci Signal. 2009;2:ra50. (from Pfam)

GO Terms:
Molecular Function:
protein binding (GO:0005515)
Date:
2024-10-16

Family Accession:
NF012803.5
Method:
HMM

5.
new record, indexing in progress
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6.
new record, indexing in progress
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7.
new record, indexing in progress
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8.
new record, indexing in progress
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9.
new record, indexing in progress
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10.
new record, indexing in progress
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11.
new record, indexing in progress
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12.
new record, indexing in progress
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13.
new record, indexing in progress
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14.

SepM family pheromone-processing serine protease

This HMM describes a peptide pheromone-processing S16-type serine protease found broadly in Gram-positive bacteria, and named for the founding member from Streptococcus mutans (see BlastRule NBR014542). The Lon-like catalytic domain is located toward the C-terminus, and has a Ser-Lys active site dyad rather than the more common Ser-His-Asp triad found in large numbers of serine proteases. Members of this family also have a PDZ domain.

Date:
2022-12-21

Family Accession:
NF041438.1
Method:
HMM

15.

PDZ domain-containing protein

PDZ domain-containing protein similar to Bacillus subtilis YlbL, which belongs to the peptidase S16 family

Date:
2017-07-17

Family Accession:
11466013
Method:
Sparcle

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