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Links from Protein

Items: 13

1.

DNA polymerase thumb domain-containing protein

This is the thumb domain found in DNA polymerase iota and related proteins. This domain makes contacts with the minor groove of DNA. Paper describing PDB structure 1t3n. [1]. 15254543. Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing. Nair DT, Johnson RE, Prakash S, Prakash L, Aggarwal AK;. Nature. 2004;430:377-380. Paper describing PDB structure 2alz. [2]. 16216587. Human DNA polymerase iota incorporates dCTP opposite template G via a G.C + Hoogsteen base pair. Nair DT, Johnson RE, Prakash L, Prakash S, Aggarwal AK;. Structure. 2005;13:1569-1577. Paper describing PDB structure 2aq4. [3]. 16195463. Rev1 employs a novel mechanism of DNA synthesis using a protein template. Nair DT, Johnson RE, Prakash L, Prakash S, Aggarwal AK;. Science. 2005;309:2219-2222. Paper describing PDB structure 2dpi. [4]. 16819516. Hoogsteen base pair formation promotes synthesis opposite the 1,N6-ethenodeoxyadenosine lesion by human DNA polymerase iota. Nair DT, Johnson RE, Prakash L, Prakash S, Aggarwal AK;. Nat Struct Mol Biol. 2006;13:619-625. Paper describing PDB structure 3gqc. [5]. 19464298. Structure of the human Rev1-DNA-dNTP ternary complex. Swan MK, Johnson RE, Prakash L, Prakash S, Aggarwal AK;. J Mol Biol. 2009;390:699-709. (from Pfam)

Date:
2024-10-21

Family Accession:
NF046167.1
Method:
HMM

2.

impB/mucB/samB family C-terminal domain

These proteins are involved in UV protection (Swiss). (from Pfam)

GO Terms:
Molecular Function:
damaged DNA binding (GO:0003684)
Biological Process:
DNA repair (GO:0006281)
Date:
2024-08-14

Family Accession:
NF023227.5
Method:
HMM

3.

IMS family HHH motif

These proteins are involved in UV protection, eg (Swiss:P07375). (from Pfam)

Date:
2024-08-14

Family Accession:
NF023226.5
Method:
HMM

4.

impB/mucB/samB family

These proteins are involved in UV protection (Swiss). (from Pfam)

GO Terms:
Biological Process:
DNA repair (GO:0006281)
Date:
2024-08-14

Family Accession:
NF013015.5
Method:
HMM

5.
new record, indexing in progress
Family Accession:
6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
Family Accession:
8.
new record, indexing in progress
Family Accession:
9.
new record, indexing in progress
Family Accession:
10.
new record, indexing in progress
Family Accession:
11.

DNA polymerase IV

DNA polymerase IV facilitates translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions

Date:
2017-02-03

Family Accession:
11479721
Method:
Sparcle

12.

DNA polymerase IV

Involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function

GO Terms:
Molecular Function:
damaged DNA binding (GO:0003684)
Molecular Function:
DNA-directed DNA polymerase activity (GO:0003887)
Biological Process:
DNA repair (GO:0006281)
Date:
2021-10-01

Family Accession:
NF002492.0
Method:
HMM

13.

DNA polymerase IV

Involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function

Gene:
dinB
GO Terms:
Molecular Function:
damaged DNA binding (GO:0003684)
Molecular Function:
DNA-directed DNA polymerase activity (GO:0003887)
Biological Process:
DNA repair (GO:0006281)
Date:
2021-07-22

Family Accession:
NF002677.0
Method:
HMM

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