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Links from Protein

Items: 12

1.

SDR family oxidoreductase

This domain is found in Enoyl-(Acyl carrier protein) reductases. (from Pfam)

Date:
2024-08-14
Family Accession:
NF024950.5
Method:
HMM
2.

KR domain-containing protein

This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group [1]. [1]. 23790488. Structural and stereochemical analysis of a modular polyketide synthase ketoreductase domain required for the generation of a cis-alkene. Bonnett SA, Whicher JR, Papireddy K, Florova G, Smith JL, Reynolds KA;. Chem Biol. 2013;20:772-783. (from Pfam)

Date:
2024-10-16
Family Accession:
NF020243.5
Method:
HMM
3.

SDR family NAD(P)-dependent oxidoreductase

This family contains a wide variety of dehydrogenases. [1]. 9735295. The refined crystal structure of Drosophila lebanonensis alcohol dehydrogenase at 1.9 A resolution. Benach J, Atrian S, Gonzalez-Duarte R, Ladenstein R;. J Mol Biol 1998;282:383-399. [2]. 10387002. Structure of tropinone reductase-II complexed with NADP+ and pseudotropine at 1.9 A resolution: implication for stereospecific substrate binding and catalysis. Yamashita A, Kato H, Wakatsuki S, Tomizaki T, Nakatsu T, Nakajima K, Hashimoto T, Yamada Y, Oda J;. Biochemistry 1999;38:7630-7637. (from Pfam)

Date:
2024-10-16
Family Accession:
NF012334.5
Method:
HMM
4.
new record, indexing in progress
Family Accession:
5.
new record, indexing in progress
Family Accession:
6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
Family Accession:
8.
new record, indexing in progress
Family Accession:
9.
new record, indexing in progress
Family Accession:
10.

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD

Gene:
kduD
Date:
2020-10-26
Family Accession:
NF006528.0
Method:
HMM
11.

glucose 1-dehydrogenase

GO Terms:
Molecular Function:
oxidoreductase activity (GO:0016491)
Date:
2021-07-21
Family Accession:
NF005559.1
Method:
HMM
12.

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD

This HMM describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (PF00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

Gene:
kduD
GO Terms:
Biological Process:
polysaccharide catabolic process (GO:0000272)
Molecular Function:
oxidoreductase activity (GO:0016491)
Molecular Function:
NAD binding (GO:0051287)
Date:
2024-06-27
Family Accession:
TIGR01832.1
Method:
HMM
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