Protein Family Models for Protein (Select 652576882) - Protein Family Models

Select item 4292311.

PKD domain-containing protein

This entry is composed of PKD domains found in bacterial surface proteins. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF040138.4
Method:: HMM

Select item 4240312.

c-type cytochrome

GO Terms:

Molecular Function:: electron transfer activity (GO:0009055)

Molecular Function:: heme binding (GO:0020037)

Date:: 2024-08-14

Family Accession:: NF024834.5
Method:: HMM

Select item 4174623.

PQQ-dependent sugar dehydrogenase

Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold. [1]. 10364396. Ascorbic acid metabolism in pea seedlings. A comparison of. D-glucosone, L-sorbosone, and L-galactono-1,4-lactone as. ascorbate precursors .. Pallanca JE, Smirnoff N;. Plant Physiol 1999;120:453-462. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF019607.5
Method:: HMM

Select item 4164524.

ThuA domain-containing protein

This family consists of several bacterial ThuA-like proteins. ThuA appears to be involved in utilisation of trehalose [1]. The thuA and thuB genes form part of the trehalose/sucrose transport operon thuEFGKAB, which is located on the pSymB megaplasmid. The thuA and thuB genes are induced in vitro by trehalose but not by sucrose and the extent of its induction depends on the concentration of trehalose available in the medium [2]. ThuA is involved in the conversion of of disaccharides to their respective 3-keto derivatives [3]. [1]. 12003938. Redundancy in periplasmic binding protein-dependent transport. systems for trehalose, sucrose, and maltose in Sinorhizobium. meliloti.. Jensen JB, Peters NK, Bhuvaneswari TV;. J Bacteriol. 2002;184:2978-2986.. [2]. 19086182. Lack of trehalose catabolism in Sinorhizobium species increases. their nodulation competitiveness on certain host genotypes.. Ampomah OY, Jensen JB, Bhuvaneswari TV;. New Phytol. 2008;179:495-504.. [3]. 23772075. The thuEFGKAB operon of rhizobia and agrobacterium tumefaciens. codes for transport of trehalose, maltitol, and isomers of. sucrose and their assimilation through the formation of their. 3-keto derivatives.. Ampomah OY, Avetisyan A, Hansen E, Svenson J, Huser T, Jensen. JB, Bhuvaneswari TV;. J Bacteriol. 2013;195:3797-3807. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF018038.5
Method:: HMM

Select item 4119705.

c-type cytochrome

The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family. (from Pfam)

GO Terms:

Molecular Function:: electron transfer activity (GO:0009055)

Molecular Function:: heme binding (GO:0020037)

Date:: 2024-08-14

Family Accession:: NF012264.5
Method:: HMM

Select item 4117966.

PKD domain-containing protein

This domain was first identified in the Polycystic kidney disease protein PKD1. This domain has been predicted to contain an Ig-like fold [1]. [1]. 7736581. Polycystic kidney disease: the complete structure of the PKD1. gene and its protein.. The International Polycystic Kidney Disease Consortium;. Cell. 1995;81:289-298.. [2]. 9889186. The structure of a PKD domain from polycystin-1: implications. for polycystic kidney disease.. Bycroft M, Bateman A, Clarke J, Hamill SJ, Sandford R, Thomas. RL, Chothia C;. EMBO J 1999;18:297-305. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF012999.5
Method:: HMM

Select item 4041617.