Recombinational repair of chromosomal DNA double-strand breaks generated by a restriction endonuclease

Mol Microbiol. 2001 Aug;41(4):873-83. doi: 10.1046/j.1365-2958.2001.02553.x.

Abstract

DNA double-strand break repair can be accomplished by homologous recombination when a sister chromatid or a homologous chromosome is available. However, the study of sister chromatid double-strand break repair in prokaryotes is complicated by the difficulty in targeting a break to only one copy of two essentially identical DNA sequences. We have developed a system using the Escherichia coli chromosome and the restriction enzyme EcoKI, in which double-strand breaks can be introduced into only one sister chromatid. We have shown that the components of the RecBCD and RecFOR 'pathways' are required for the recombinational repair of these breaks. Furthermore, we have shown a requirement for SbcCD, the prokaryotic homologue of Rad50/Mre11. This is the first demonstration that, like Rad50/Mre11, SbcCD is required for recombination in a wild-type cell. Our work suggests that the SbcCD-Rad50/Mre11 family of proteins, which have two globular domains separated by a long coiled-coil linker, is specifically required for the co-ordination of double-strand break repair reactions in which two DNA ends are required to recombine at one target site.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 2-Aminopurine / pharmacology
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Chromosome Breakage / genetics
  • Chromosomes, Bacterial / genetics
  • Chromosomes, Bacterial / metabolism*
  • DNA Damage* / drug effects
  • DNA Repair*
  • DNA Replication
  • DNA Restriction Enzymes / metabolism*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Deoxyribonucleases / genetics
  • Deoxyribonucleases / metabolism
  • Escherichia coli / enzymology
  • Escherichia coli / genetics*
  • Escherichia coli Proteins*
  • Exonucleases / genetics
  • Exonucleases / metabolism
  • Models, Genetic
  • Mutation
  • Recombination, Genetic*

Substances

  • Bacterial Proteins
  • DNA-Binding Proteins
  • Escherichia coli Proteins
  • SbcC protein, Bacteria
  • SbcC protein, E coli
  • 2-Aminopurine
  • Deoxyribonucleases
  • Exonucleases
  • sbcD protein, E coli
  • DNA Restriction Enzymes
  • endodeoxyribonuclease EcoKI