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    Spata31f1d spermatogenesis associated 31 subfamily F member 1D [ Mus musculus (house mouse) ]

    Gene ID: 100043920, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Spata31f1dprovided by MGI
    Official Full Name
    spermatogenesis associated 31 subfamily F member 1Dprovided by MGI
    Primary source
    MGI:MGI:5434294
    See related
    Ensembl:ENSMUSG00000078746 AllianceGenome:MGI:5434294
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam205a; Gm20938; Fam205a4; Spata31f1-4
    Summary
    Predicted to be located in membrane. Orthologous to several human genes including SPATA31F1 (SPATA31 subfamily F member 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 14.2), cortex adult (RPKM 3.3) and 6 other tissues See more
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    Genomic context

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    See Spata31f1d in Genome Data Viewer
    Location:
    4 A5; 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (41774311..41971858)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (41942295..41971858)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10231 Neighboring gene STARR-positive B cell enhancer ABC_E10232 Neighboring gene predicted gene, 42274 Neighboring gene STARR-positive B cell enhancer ABC_E1641 Neighboring gene interleukin 11 receptor subunit alpha 1 Neighboring gene galactose-1-phosphate uridyl transferase Neighboring gene C-C motif chemokine ligand 27A Neighboring gene C-C motif chemokine ligand 19, pseudogene 5 Neighboring gene ethanol induced 1 pseudogene Neighboring gene Fam205 pseudogene Neighboring gene predicted gene, 30036 Neighboring gene predicted gene, 54216 Neighboring gene predicted gene, 29801 Neighboring gene predicted gene, 29804 Neighboring gene transmembrane protein C9orf144B homolog Neighboring gene C-C motif chemokine ligand 21D Neighboring gene C-C motif chemokine ligand 19, pseudogene 1 Neighboring gene uncharacterized LOC118568647 Neighboring gene predicted gene, 20878 Neighboring gene RIKEN cDNA 4933409K07 gene Neighboring gene predicted gene, 21093

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Lineage-specific biology revealed by a finished genome assembly of the mouse. Church DM, et al. PLoS Biol, 2009 May 5. PMID 19468303, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    spermatogenesis-associated protein 31F1D; protein SPATA31F1-4
    Names
    family with sequence similarity 205, member A4
    protein FAM205A
    protein FAM205A-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357590.1 → NP_001344519.1  spermatogenesis-associated protein 31F1D

      Status: VALIDATED

      Source sequence(s)
      CT868690
      Conserved Domains (2) summary
      pfam14650
      Location:335 → 520
      FAM75; FAM75 family
      pfam15371
      Location:3 → 57
      DUF4599; Domain of unknown function (DUF4599)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      41774311..41971858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036163531.1 → XP_036019424.1  protein SPATA31F1-4 isoform X2

      Conserved Domains (2) summary
      pfam14650
      Location:335 → 520
      FAM75; FAM75 family
      pfam15371
      Location:3 → 57
      DUF4599; Domain of unknown function (DUF4599)

    2. XM_036163532.1 → XP_036019425.1  protein SPATA31F1-4 isoform X2

      Conserved Domains (2) summary
      pfam14650
      Location:335 → 520
      FAM75; FAM75 family
      pfam15371
      Location:3 → 57
      DUF4599; Domain of unknown function (DUF4599)

    3. XM_001481239.6 → XP_001481289.2  protein SPATA31F1-4 isoform X1

      See identical proteins and their annotated locations for XP_001481289.2

      UniProtKB/Swiss-Prot
      A2APU8, C0HKD1, C0HKD2, C0HKD3
      Related
      ENSMUSP00000103661.3, ENSMUST00000108026.3
      Conserved Domains (3) summary
      pfam14650
      Location:416 → 601
      FAM75; FAM75 family
      pfam15371
      Location:52 → 138
      DUF4599; Domain of unknown function (DUF4599)
      pfam15402
      Location:1093 → 1246
      Spc7_N; N-terminus of kinetochore NMS complex subunit Spc7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C0HKD3.1 GenPept UniProtKB/Swiss-Prot:C0HKD3

    Gene LinkOut

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