U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SFMBT2 Scm like with four mbt domains 2 [ Equus caballus (horse) ]

    Gene ID: 100057049, updated on 18-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SFMBT2provided by VGNC
    Official Full Name
    Scm like with four mbt domains 2provided by VGNC
    Primary source
    VGNC:VGNC:22896
    See related
    Ensembl:ENSECAG00000021462
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SFMBT2 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_12 current TB-T2T (GCF_041296265.1) 29 NC_091712.1 (38012395..38257167)
    RS_2024_08 previous assembly EquCab3.0 (GCF_002863925.1) 29 NC_009172.3 (27768617..28008514)

    Chromosome 29 - NC_091712.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111771206 Neighboring gene uncharacterized LOC111771235 Neighboring gene uncharacterized LOC102148726 Neighboring gene uncharacterized LOC138921387 Neighboring gene protein kinase C theta

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Thoroughbred Stallion gene expression
    • BioProject: PRJEB53382
    • Analysis date: Mon Jan 06 09:53:19 2025

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    scm-like with four MBT domains protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_041296265.1-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TB-T2T Primary Assembly

    Genomic

    1. NC_091712.1 Reference TB-T2T Primary Assembly

      Range
      38012395..38257167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001499964.6 → XP_001500014.1  scm-like with four MBT domains protein 2 isoform X1

      See identical proteins and their annotated locations for XP_001500014.1

      UniProtKB/TrEMBL
      A0A9L0TTT6
      Conserved Domains (4) summary
      cd09581
      Location:814 → 894
      SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
      smart00561
      Location:48 → 144
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:528 → 643
      SLED; SLED domain
      cl28034
      Location:745 → 800
      Herpes_ICP4_N; Herpesvirus ICP4-like protein N-terminal region

    2. XM_005606941.4 → XP_005606998.1  scm-like with four MBT domains protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A9L0TTT6, F6R1F6
      Related
      ENSECAP00000022842.2
      Conserved Domains (4) summary
      cd09581
      Location:813 → 893
      SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
      smart00454
      Location:820 → 884
      SAM; Sterile alpha motif
      smart00561
      Location:47 → 143
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:527 → 642
      DUF3588; Protein of unknown function (DUF3588)

    3. XM_005606938.4 → XP_005606995.1  scm-like with four MBT domains protein 2 isoform X1

      See identical proteins and their annotated locations for XP_005606995.1

      UniProtKB/TrEMBL
      A0A9L0TTT6
      Related
      ENSECAP00000089854.1
      Conserved Domains (4) summary
      cd09581
      Location:814 → 894
      SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
      smart00561
      Location:48 → 144
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:528 → 643
      SLED; SLED domain
      cl28034
      Location:745 → 800
      Herpes_ICP4_N; Herpesvirus ICP4-like protein N-terminal region

    4. XM_070255302.1 → XP_070111403.1  scm-like with four MBT domains protein 2 isoform X1

    5. XM_023632019.2 → XP_023487787.1  scm-like with four MBT domains protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A9L0TTT6
      Conserved Domains (4) summary
      cd09581
      Location:814 → 894
      SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
      smart00561
      Location:48 → 144
      MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
      pfam12140
      Location:528 → 643
      SLED; SLED domain
      cl28034
      Location:745 → 800
      Herpes_ICP4_N; Herpesvirus ICP4-like protein N-terminal region

    6. XM_070255303.1 → XP_070111404.1  scm-like with four MBT domains protein 2 isoform X1

    7. XM_070255304.1 → XP_070111405.1  scm-like with four MBT domains protein 2 isoform X3

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.