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    ambp alpha-1-microglobulin/bikunin precursor [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 100136079, updated on 14-Dec-2023

    Summary

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    Gene symbol
    ambp
    Gene description
    alpha-1-microglobulin/bikunin precursor
    See related
    Ensembl:ENSOMYG00000018191
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See ambp in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (12144886..12149201, complement)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (9150287..9154978, complement)

    Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene exonuclease 3'-5' domain containing 3 Neighboring gene notch-regulated ankyrin repeat-containing protein A Neighboring gene uncharacterized LOC110536981 Neighboring gene long-chain fatty acid transport protein 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Combining next-generation sequencing with microarray for transcriptome analysis in rainbow trout gonads. Hayashi M, et al. Mol Reprod Dev, 2012 Dec. PMID 23109217
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein AMBP
    NP_001117858.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001124386.1 → NP_001117858.1  protein AMBP precursor

      See identical proteins and their annotated locations for NP_001117858.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ544263
      UniProtKB/TrEMBL
      A0A8C7QIN5, Q5F4T3
      Related
      ENSOMYP00000039230.2, ENSOMYT00000042823.2
      Conserved Domains (2) summary
      pfam00014
      Location:235 → 286
      Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
      pfam00061
      Location:40 → 185
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      12144886..12149201 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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