U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    trp-i trypsin I [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100137021, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    trp-i
    Gene description
    trypsin I
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Also known as
    TRY1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See trp-i in Genome Data Viewer
    Location:
    chromosome: ssa05
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa05 NC_059446.1 (69913309..69915231, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) Unplaced Scaffold NW_012357272.1 (7550..8447, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) Unplaced Scaffold NW_012376002.1 (213..978, complement)

    Chromosome ssa05 - NC_059446.1Genomic Context describing neighboring genes Neighboring gene interferon-inducible GTPase 5-like Neighboring gene trypsin-1-like Neighboring gene trypsin-1-like Neighboring gene trypsin-1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Structure determination and refinement of benzamidine-inhibited trypsin from the North Atlantic salmon (Salmo salar) at 1.82 A resolution. Smalås A, et al. Acta Crystallogr D Biol Crystallogr, 1993 May 1. PMID 15299521
    2. Cold adaption of enzymes: structural comparison between salmon and bovine trypsins. Smalås AO, et al. Proteins, 1994 Oct. PMID 7846025
    3. Molecular cloning and characterization of anionic and cationic variants of trypsin from Atlantic salmon. Male R, et al. Eur J Biochem, 1995 Sep 1. PMID 7556223
    4. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    trypsin-1
    NP_001119704.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126232.1 → NP_001119704.1  trypsin-1 precursor

      See identical proteins and their annotated locations for NP_001119704.1

      Status: PROVISIONAL

      Source sequence(s)
      X70075
      UniProtKB/Swiss-Prot
      P35031
      UniProtKB/TrEMBL
      A0A1S2X2M3, B5X8T3
      Conserved Domains (2) summary
      smart00020
      Location:20 → 234
      Tryp_SPc; Trypsin-like serine protease
      cd00190
      Location:21 → 238
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059446.1 Reference Ssal_v3.1

      Range
      69913309..69915231 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials