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    LOC100141680 DNA ligase 3 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 100141680, updated on 12-Apr-2024

    Summary

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    Gene symbol
    LOC100141680
    Gene description
    DNA ligase 3
    Locus tag
    TcasGA2_TC004521
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    See LOC100141680 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 4 NC_087397.1 (11974568..11976721)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG2 NC_007417.3 (3299178..3301281, complement)

    Chromosome 4 - NC_087397.1Genomic Context describing neighboring genes Neighboring gene fibrinogen-like protein 1 Neighboring gene venom protease Neighboring gene DNA ligase 3 Neighboring gene tubulin alpha 1-like protein Neighboring gene palmitoyltransferase ZDHHC6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA ligase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in base-excision repair, DNA ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lagging strand elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA ligase III-XRCC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA ligase 3
    Names
    AUGUSTUS-3.0.2_04521
    DNA ligase 3-like Protein
    GLEAN_04521

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087397.1 Reference icTriCast1.1 Primary Assembly

      Range
      11974568..11976721
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001809390.4 → XP_001809442.1  DNA ligase 3

      See identical proteins and their annotated locations for XP_001809442.1

      UniProtKB/TrEMBL
      D6WBL1
      Conserved Domains (3) summary
      pfam00645
      Location:9 → 90
      zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
      pfam04675
      Location:142 → 308
      DNA_ligase_A_N; DNA ligase N terminus
      pfam16759
      Location:353 → 433
      LIG3_BRCT; DNA ligase 3 BRCT domain

    2. XM_015983619.2 → XP_015839105.1  DNA ligase 3

      UniProtKB/TrEMBL
      D6WBL1
      Conserved Domains (3) summary
      pfam00645
      Location:9 → 90
      zf-PARP; Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
      pfam04675
      Location:142 → 308
      DNA_ligase_A_N; DNA ligase N terminus
      pfam16759
      Location:353 → 433
      LIG3_BRCT; DNA ligase 3 BRCT domain
    Nucleotide Protein Strain
    Heading Accession and Version

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