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    LIPM lipase family member M [ Sus scrofa (pig) ]

    Gene ID: 100153843, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LIPMprovided by VGNC
    Official Full Name
    lipase family member Mprovided by VGNC
    Primary source
    VGNC:VGNC:89742
    See related
    Ensembl:ENSSSCG00000010444
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in lung (RPKM 3.9), spleen (RPKM 2.7) and 5 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See LIPM in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (100716038..100748916)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (109700870..109732335)

    Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256748 Neighboring gene lipase member K Neighboring gene lipase member N Neighboring gene ankyrin repeat domain 22 Neighboring gene STAM binding protein like 1 Neighboring gene actin alpha 2, smooth muscle

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipase member M

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

      Range
      100716038..100748916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013983531.2 → XP_013838985.1  lipase member M isoform X2

      Conserved Domains (3) summary
      PLN02872
      Location:42 → 407
      PLN02872; triacylglycerol lipase
      pfam04083
      Location:41 → 103
      Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
      pfam12695
      Location:85 → 223
      Abhydrolase_5; Alpha/beta hydrolase family

    2. XM_013983529.2 → XP_013838983.1  lipase member M isoform X1

      UniProtKB/TrEMBL
      A0A4X1V5I0, A0A8D0NX33, F1SCZ0
      Conserved Domains (3) summary
      PLN02872
      Location:50 → 415
      PLN02872; triacylglycerol lipase
      pfam04083
      Location:49 → 111
      Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
      pfam12695
      Location:93 → 231
      Abhydrolase_5; Alpha/beta hydrolase family

    3. XM_013983533.2 → XP_013838987.1  lipase member M isoform X3

      Conserved Domains (3) summary
      PLN02872
      Location:15 → 380
      PLN02872; triacylglycerol lipase
      pfam04083
      Location:14 → 76
      Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
      pfam12695
      Location:58 → 196
      Abhydrolase_5; Alpha/beta hydrolase family

    4. XM_001928440.4 → XP_001928475.1  lipase member M isoform X1

      UniProtKB/TrEMBL
      A0A4X1V5I0, A0A8D0NX33, F1SCZ0
      Related
      ENSSSCP00000011132.2, ENSSSCT00000011429.4
      Conserved Domains (3) summary
      PLN02872
      Location:50 → 415
      PLN02872; triacylglycerol lipase
      pfam04083
      Location:49 → 111
      Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
      pfam12695
      Location:93 → 231
      Abhydrolase_5; Alpha/beta hydrolase family
    Nucleotide Protein
    Heading Accession and Version

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