U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC100177521 S-methyl-5'-thioadenosine phosphorylase-like [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 100177521, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100177521
    Gene description
    S-methyl-5'-thioadenosine phosphorylase-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
    Also known as
    MTAP; MTAPase
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100177521 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 6 NC_020171.2 (310298..311545)

    Chromosome 6 - NC_020171.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100175252 Neighboring gene galectin-6 Neighboring gene galectin-6-like Neighboring gene microsomal triglyceride transfer protein large subunit-like Neighboring gene cyclin-dependent kinase D-3 Neighboring gene prohibitin-2-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_020171.2 Chromosome 6 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Dehal P, et al. Science, 2002 Dec 13. PMID 12481130
    2. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
    3. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-methyl-5-thioadenosine phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-methionine salvage from methylthioadenosine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleoside metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    S-methyl-5'-thioadenosine phosphorylase
    Names
    5'-methylthioadenosine phosphorylase
    MTA phosphorylase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020171.2 Reference KH Primary Assembly

      Range
      310298..311545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026834807.1 → XP_026690608.1  S-methyl-5'-thioadenosine phosphorylase

      UniProtKB/Swiss-Prot
      F6X2V8
      Conserved Domains (1) summary
      cl00303
      Location:11 → 255
      PNP_UDP_1; Phosphorylase superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F6X2V8.1 GenPept UniProtKB/Swiss-Prot:F6X2V8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.