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    LOC100178531 mucin-5AC [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 100178531, updated on 26-Oct-2021

    Summary

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    Gene symbol
    LOC100178531
    Gene description
    mucin-5AC
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See LOC100178531 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 3 NC_020168.2 (107163..111871)

    Chromosome 3 - NC_020168.2Genomic Context describing neighboring genes Neighboring gene nesprin-1 Neighboring gene uncharacterized LOC100184865 Neighboring gene nesprin-1-like Neighboring gene nesprin-1 Neighboring gene uncharacterized LOC108949322 Neighboring gene uncharacterized LOC113474148

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020168.2 Chromosome 3 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    location of vulva defective 1; mucin-5AC

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020168.2 Reference KH Primary Assembly

      Range
      107163..111871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018811173.2 → XP_018666718.1  mucin-5AC isoform X4

      UniProtKB/TrEMBL
      A0A1W5B2M3

    2. XM_018811172.2 → XP_018666717.1  mucin-5AC isoform X3

      UniProtKB/TrEMBL
      A0A1W5B2M3

    3. XM_026833966.1 → XP_026689767.1  location of vulva defective 1 isoform X2

      Conserved Domains (1) summary
      cl09951
      Location:89 → 131
      FN2; Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and ...

    4. XM_009859578.3 → XP_009857880.1  mucin-5AC isoform X5

      UniProtKB/TrEMBL
      A0A1W3JAX2
      Conserved Domains (2) summary
      pfam00040
      Location:89 → 131
      fn2; Fibronectin type II domain
      cl09951
      Location:31 → 72
      FN2; Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and ...

    5. XM_009859577.3 → XP_009857879.1  mucin-5AC isoform X1

      UniProtKB/TrEMBL
      A0A1W3JG67
      Conserved Domains (2) summary
      pfam00040
      Location:89 → 131
      fn2; Fibronectin type II domain
      cl09951
      Location:31 → 72
      FN2; Fibronectin Type II domain: FN2 is one of three types of internal repeats which combine to form larger domains within fibronectin. Fibronectin, a plasma protein that binds cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and ...
    Nucleotide Protein
    Heading Accession and Version

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