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    LOC100248126 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [ Vitis vinifera (wine grape) ]

    Gene ID: 100248126, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100248126
    Gene description
    dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
    Locus tag
    VIT_00028357001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0016757 GO:0004579 GO:0016740 GO:0003824 GO:0008250 GO:0005789
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    Genomic context

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    See LOC100248126 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (6894982..6907308, complement)
    102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (6526869..6539186, complement)

    Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100260094 Neighboring gene probable methyltransferase PMT8 Neighboring gene uncharacterized LOC132254060 Neighboring gene uncharacterized protein At1g03900 Neighboring gene protein CHROMATIN REMODELING 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of oligosaccharyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

      Range
      6894982..6907308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002272540.5 → XP_002272576.3  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2

      UniProtKB/TrEMBL
      A5AST9, D7U318
    Nucleotide Protein
    Heading Accession and Version

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