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    LOC100249475 probable purple acid phosphatase 20 [ Vitis vinifera (wine grape) ]

    Gene ID: 100249475, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC100249475
    Gene description
    probable purple acid phosphatase 20
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100249475 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (18630165..18631675, complement)
    102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (17443082..17445110, complement)

    Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104880147 Neighboring gene acyl carrier protein 2, mitochondrial Neighboring gene probable purple acid phosphatase 20 Neighboring gene purple acid phosphatase 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable purple acid phosphatase 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

      Range
      18630165..18631675 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002276849.4 → XP_002276885.3  probable purple acid phosphatase 20

      UniProtKB/TrEMBL
      A0A438EK81, F6HKK1
    Nucleotide Protein
    Heading Accession and Version

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