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    LOC100249542 embryogenesis-associated protein EMB8 [ Vitis vinifera (wine grape) ]

    Gene ID: 100249542, updated on 14-Nov-2024

    Summary

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    Gene symbol
    LOC100249542
    Gene description
    embryogenesis-associated protein EMB8
    Locus tag
    VIT_00019651001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100249542 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 2 NC_081806.1 (2021322..2027554)
    102 previous assembly 12X (GCF_000003745.3) 2 NC_012008.3 (2206224..2212221)

    Chromosome 2 - NC_081806.1Genomic Context describing neighboring genes Neighboring gene protein HLB1 Neighboring gene rab GTPase-activating protein 22 Neighboring gene uncharacterized LOC100242761 Neighboring gene methionine gamma-lyase Neighboring gene cytochrome P450 78A3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables monoacylglycerol lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables short-chain carboxylesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    embryogenesis-associated protein EMB8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081806.1 Reference ASM3070453v1 Primary Assembly

      Range
      2021322..2027554
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002280146.5 → XP_002280182.1  embryogenesis-associated protein EMB8

      UniProtKB/TrEMBL
      A0A438BVL4, D7TVR0
      Conserved Domains (2) summary
      PLN02511
      Location:29 → 417
      PLN02511; hydrolase
      cl21494
      Location:71 → 393
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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