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    LOC100256523 ABC transporter F family member 3 [ Vitis vinifera (wine grape) ]

    Gene ID: 100256523, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100256523
    Gene description
    ABC transporter F family member 3
    Locus tag
    VIT_00019609001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100256523 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 2 NC_081806.1 (1727222..1737136, complement)
    102 previous assembly 12X (GCF_000003745.3) 2 NC_012008.3 (1919336..1929199, complement)

    Chromosome 2 - NC_081806.1Genomic Context describing neighboring genes Neighboring gene glutamine-dependent NAD(+) synthetase Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene trehalase Neighboring gene uncharacterized LOC104881387 Neighboring gene short-chain dehydrogenase TIC 32 A, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter F family member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081806.1 Reference ASM3070453v1 Primary Assembly

      Range
      1727222..1737136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002263143.5 → XP_002263179.1  ABC transporter F family member 3

      See identical proteins and their annotated locations for XP_002263179.1

      UniProtKB/TrEMBL
      A0A438BVD9, D7TVM3
      Conserved Domains (4) summary
      cd03221
      Location:506 → 698
      ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
      PLN03073
      Location:1 → 715
      PLN03073; ABC transporter F family; Provisional
      pfam12848
      Location:409 → 492
      ABC_tran_Xtn; ABC transporter
      cl21455
      Location:204 → 369
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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