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    LOC100266959 SART-1 family protein DOT2 [ Vitis vinifera (wine grape) ]

    Gene ID: 100266959, updated on 20-Nov-2023

    Summary

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    Gene symbol
    LOC100266959
    Gene description
    SART-1 family protein DOT2
    Locus tag
    VIT_00035173001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100266959 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 11 NC_081815.1 (15349566..15369312, complement)
    102 previous assembly 12X (GCF_000003745.3) 11 NC_012017.3 (12769372..12789479, complement)

    Chromosome 11 - NC_081815.1Genomic Context describing neighboring genes Neighboring gene auxin-induced protein 6B-like Neighboring gene galacturonokinase Neighboring gene pumilio homolog 5-like Neighboring gene transcription factor MYB93

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maturation of 5S rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SART-1 family protein DOT2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081815.1 Reference ASM3070453v1 Primary Assembly

      Range
      15349566..15369312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010658376.3 → XP_010656678.1  SART-1 family protein DOT2

      See identical proteins and their annotated locations for XP_010656678.1

      UniProtKB/TrEMBL
      D7UD56
      Conserved Domains (2) summary
      pfam03343
      Location:259 → 852
      SART-1; SART-1 family
      pfam13054
      Location:168 → 204
      DUF3915; Protein of unknown function (DUF3915)

    2. XM_059740882.1 → XP_059596865.1  SART-1 family protein DOT2

      UniProtKB/TrEMBL
      D7UD56
    Nucleotide Protein
    Heading Accession and Version

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