CDH16 cadherin 16 [Oryctolagus cuniculus (rabbit)] - Gene

Summary

Gene symbol: CDH16
Gene description: cadherin 16
See related: Ensembl:ENSOCUG00000000580
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Oryctolagus cuniculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
RS_2024_11	current	mOryCun1.1 (GCF_964237555.1)	18	NC_091449.1 (49744020..49753299, complement)
RS_2023_02	previous assembly	UM_NZW_1.0 (GCF_009806435.1)	5	NC_067378.1 (22308781..22317985, complement)

Chromosome 18 - NC_091449.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

MARC_27462-27463:1034352419:3 (e-PCR)
- UniSTS:269093

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cadherin binding	IEA Inferred from Electronic Annotation more info	PubMed
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in adherens junction organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell morphogenesis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell-cell adhesion mediated by cadherin	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cell-cell junction assembly	IEA Inferred from Electronic Annotation more info	PubMed
involved_in homophilic cell adhesion via plasma membrane adhesion molecules	IEA Inferred from Electronic Annotation more info	PubMed
involved_in multicellular organism development	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in adherens junction	IEA Inferred from Electronic Annotation more info	PubMed
part_of catenin complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cadherin-16

Names: Kidney-specific cadherin; cadherin 16, KSP-cadherin, kidney-specific cadherin; ksp-cadherin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001171046.2 → NP_001164517.1 cadherin-16 precursor

See identical proteins and their annotated locations for NP_001164517.1

Status: PROVISIONAL

Source sequence(s)

U28945

UniProtKB/Swiss-Prot

Q28634

Related

ENSOCUT00000000583.4

Conserved Domains (2) summary

cd11304
Location:343 → 445

Cadherin_repeat; Cadherin tandem repeat domain

smart00112
Location:264 → 334

CA; Cadherin repeats