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    LOC100372124 ubiquitin thioesterase ZRANB1-like [ Saccoglossus kowalevskii ]

    Gene ID: 100372124, updated on 19-Oct-2023

    Summary

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    Gene symbol
    LOC100372124
    Gene description
    ubiquitin thioesterase ZRANB1-like
    See related
    EnsemblRapid:LOC100372124
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Saccoglossus kowalevskii
    Lineage
    Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
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    Genomic context

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    See LOC100372124 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003130355.1 (648482..663697, complement)

    NW_003130355.1Genomic Context describing neighboring genes Neighboring gene phosphoacetylglucosamine mutase-like Neighboring gene alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like Neighboring gene TWiK family of potassium channels protein 7-like Neighboring gene uncharacterized LOC102810312

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003130355 unplaced scaffold reference Skow_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K29-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K33-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin thioesterase ZRANB1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Skow_1.1 Primary Assembly

    Genomic

    1. NW_003130355.1 Reference Skow_1.1 Primary Assembly

      Range
      648482..663697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006817836.1 → XP_006817899.1  ubiquitin thioesterase ZRANB1-like

      Related
      XP_006817899.1, XM_006817836.1
      Conserved Domains (3) summary
      smart00547
      Location:131 → 153
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:73 → 92
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:421 → 567
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version

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